C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: translocating chain-associating membrane protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037998 Tram2-001 ENSMUSG00000041779 10090 - 1:20996299-21079229 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037998
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037998 6.747±1.19 1.164±0.13 4.181±0.15 1.461±0.00 4.700±0.55 3.470±0.71 1.870±0.09 1.942±0.22 2.166±0.82 5.539±0.29 0.587±0.09 11.088±3.77 8.779±4.71 3.624±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081C CIL_00081C_0002 VISTA 1:20619958-21222635
CIL_0005N7 CIL_0005N7_0002 CGP 1:20951626-21079229
CIL_0005N6 CIL_0005N6_0002 CGP 1:20996299-21230167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0032964 IEA collagen biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000182527 TRAM2-001 protein_coding Homo_sapiens 0 1378

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