C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005R7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000019150-ENSDARG00000058377 CGP 7955 17:10280426-10342982
GeneTranscriptPositionBiotype
ENSDARG00000019150 (foxa1)
forkhead box A1 		ENSDART00000022920 (foxa1-001) 10280426-10283287 protein_coding
ENSDARG00000058377 (ttc6)
tetratricopeptide repeat domain 6 		ENSDART00000081247 (ttc6-201) 10320824-10342552 protein_coding
ENSDART00000154258 (ttc6-002) 10285714-10291422 protein_coding
ENSDART00000154315 (ttc6-001) 10291592-10342982 protein_coding
ENSDART00000156014 (ttc6-003) 10321143-10323936 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0005R7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129514-ENSG00000139865 CGP 9606 14:37589984-38041442
GeneTranscriptPositionBiotype
ENSG00000129514 (FOXA1)
forkhead box A1 		ENST00000250448 (FOXA1-001) 37589984-37595034 protein_coding
ENST00000545425 (FOXA1-002) 37591093-37594262 processed_transcript
ENST00000553751 (FOXA1-003) 37592516-37595110 nonsense_mediated_decay
ENST00000554607 (FOXA1-004) 37593875-37594950 processed_transcript
ENST00000557418 (FOXA1-005) 37595024-37596059 processed_transcript
ENSG00000139865 (TTC6)
tetratricopeptide repeat domain 6 		ENST00000267368 (TTC6-201) 37795308-37842348 protein_coding
ENST00000382320 (TTC6-202) 37795308-37842348 protein_coding
ENST00000476979 (TTC6-002) 37772383-37842694 protein_coding
ENST00000478811 (TTC6-003) 37795308-37842348 nonsense_mediated_decay
ENST00000533625 (TTC6-005) 37611251-38041442 nonsense_mediated_decay
ENST00000553443 (TTC6-001) 37622065-37842463 protein_coding
ENST00000553887 (TTC6-008) 37971989-38041442 processed_transcript
ENST00000554555 (TTC6-004) 37796294-37802390 processed_transcript
ENST00000555921 (TTC6-007) 37827301-37841695 nonsense_mediated_decay
ENST00000556845 (TTC6-006) 37595847-37622318 protein_coding
ENSG00000200385 (SNORA42)
Small nucleolar RNA SNORA42/SNORA80 family 		ENST00000363515 (SNORA42.1-202) 37720425-37720561 snoRNA
ENSG00000258696 (CTD-2058B24.3)
 ENST00000554029 (CTD-2058B24.3-001) 38003113-38004847 antisense
ENSG00000259048 (CTD-2058B24.2)
 ENST00000554687 (CTD-2058B24.2-001) 38034287-38194281 antisense
ENST00000555342 (CTD-2058B24.2-002) 38038978-38091158 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005R7_0001ENSDARG00000019150ENSDART00000022920ENSDARG00000058377ENSDART00000081247ENSDART00000154258ENSDART00000154315ENSDART00000156014CIL_0005R7_0002ENSG00000129514ENST00000250448ENST00000545425ENST00000553751ENST00000554607ENST00000557418ENSG00000139865ENST00000267368ENST00000382320ENST00000476979ENST00000478811ENST00000533625ENST00000553443ENST00000553887ENST00000554555ENST00000555921ENST00000556845ENSG00000200385ENST00000363515ENSG00000258696ENST00000554029ENSG00000259048ENST00000554687ENST00000555342
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005R7_0001ENSDARG00000019150ENSDART00000022920ENSDARG00000058377ENSDART00000081247ENSDART00000154258ENSDART00000154315CIL_0005R7_0002ENSG00000129514ENST00000250448ENST00000545425ENSG00000139865ENST00000267368ENST00000478811ENST00000533625ENST00000553443ENST00000554555ENSG00000200385ENST00000363515ENSG00000258696ENST00000554029ENSG00000259048ENST00000554687ENST00000555342
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019150 ENSDART00000022920 N/A N/A N/A 1.164±0.24 N/A N/A 0.233±0.25 1.042±0.48 1.446±0.00 N/A 0.529±0.00 N/A N/A N/A
ENSDARG00000058377 ENSDART00000081247 N/A N/A N/A 0.269±0.00 N/A N/A 0.566±0.00 N/A 0.068±0.00 N/A 0.086±0.00 N/A N/A N/A
ENSDART00000154258 N/A N/A N/A 0.061±0.01 N/A N/A 0.042±0.00 0.222±0.20 0.150±0.00 N/A N/A N/A N/A N/A
ENSDART00000154315 N/A N/A N/A 0.188±0.15 N/A N/A 0.053±0.01 0.837±0.12 0.072±0.00 N/A 0.098±0.00 N/A N/A N/A
ENSDART00000156014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129514 ENST00000250448 0.046±0.00 N/A 0.022±0.00 0.043±0.00 1.527±0.00 1.748±0.00 N/A 0.897±0.66 7.158±5.63 3.086±2.42 N/A 1.636±1.51 N/A N/A
ENST00000545425 0.031±0.00 0.057±0.00 N/A N/A N/A N/A N/A 0.340±0.00 N/A N/A N/A 0.792±0.00 N/A N/A
ENST00000553751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139865 ENST00000267368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A
ENST00000382320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.019±0.00
ENST00000533625 N/A N/A N/A 0.058±0.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553443 N/A N/A N/A N/A 0.307±0.00 N/A N/A 0.444±0.00 0.167±0.00 N/A N/A N/A N/A 1.531±0.83
ENST00000553887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554555 0.119±0.00 N/A N/A 0.453±0.00 N/A N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000555921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200385 ENST00000363515 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.514±0.00 N/A N/A N/A 0.874±0.20
ENSG00000258696 ENST00000554029 N/A 0.031±0.00 N/A 0.388±0.11 0.029±0.00 N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A 0.362±0.00
ENSG00000259048 ENST00000554687 0.623±0.00 1.756±0.00 N/A 1.043±0.00 0.553±0.00 N/A 0.121±0.00 N/A 0.162±0.00 N/A N/A 0.127±0.09 0.122±0.07 N/A
ENST00000555342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.143±0.00 N/A N/A

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