C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000620_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000007715-ENSDARG00000006242 CGP 7955 11:11384827-11396293
GeneTranscriptPositionBiotype
ENSDARG00000006242 (ptp4a1)
protein tyrosine phosphatase type IVA, member 1 		ENSDART00000026814 (ptp4a1-001) 11389226-11396293 protein_coding
ENSDART00000129843 (ptp4a1-201) 11393048-11396291 protein_coding
ENSDART00000148425 (ptp4a1-002) 11389266-11395622 protein_coding
ENSDART00000151926 (ptp4a1-003) 11389341-11392942 protein_coding
ENSDARG00000007715 (lgsn)
lengsin, lens protein with glutamine synthetase domain 		ENSDART00000020256 (lgsn-001) 11384827-11388258 protein_coding
CIL_000620_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000146166-ENSG00000112245 CGP 9606 6:63275951-63583587
GeneTranscriptPositionBiotype
ENSG00000112245 (PTP4A1)
protein tyrosine phosphatase type IVA, member 1 		ENST00000370651 (PTP4A1-004) 63572012-63583587 protein_coding
ENST00000470661 (PTP4A1-002) 63521761-63576582 processed_transcript
ENST00000473334 (PTP4A1-003) 63573238-63576697 processed_transcript
ENST00000578299 (PTP4A1-005) 63572681-63576531 protein_coding
ENSG00000146166 (LGSN)
lengsin, lens protein with glutamine synthetase domain 		ENST00000370657 (LGSN-001) 63279636-63319977 protein_coding
ENST00000370658 (LGSN-201) 63275951-63319977 protein_coding
ENST00000485906 (LGSN-002) 63279383-63319977 protein_coding
ENST00000622415 (LGSN-202) 63280021-63319943 protein_coding
ENSG00000213312 (RPL7AP34)
ribosomal protein L7a pseudogene 34 		ENST00000416120 (RPL7AP34-001) 63548708-63549508 processed_pseudogene
ENSG00000218048 (RP3-407E4.4)
 ENST00000402043 (RP3-407E4.4-001) 63440766-63443580 unprocessed_pseudogene
ENSG00000218274 (RP3-407E4.3)
 ENST00000403446 (RP3-407E4.3-001) 63395007-63397106 unprocessed_pseudogene
ENSG00000218617 (RP3-407E4.2)
 ENST00000406684 (RP3-407E4.2-001) 63392222-63392606 processed_pseudogene
ENSG00000225121 (EEF1B2P5)
eukaryotic translation elongation factor 1 beta 2 pseudogene 5 		ENST00000444820 (EEF1B2P5-001) 63480134-63481876 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000620_0001ENSDARG00000006242ENSDART00000026814ENSDART00000129843ENSDART00000148425ENSDART00000151926ENSDARG00000007715ENSDART00000020256CIL_000620_0002ENSG00000112245ENST00000370651ENST00000470661ENST00000473334ENST00000578299ENSG00000146166ENST00000370657ENST00000370658ENST00000485906ENST00000622415ENSG00000213312ENST00000416120ENSG00000218048ENST00000402043ENSG00000218274ENST00000403446ENSG00000218617ENST00000406684ENSG00000225121ENST00000444820
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000620_0001ENSDARG00000006242ENSDART00000026814ENSDART00000129843ENSDART00000148425ENSDARG00000007715ENSDART00000020256CIL_000620_0002ENSG00000112245ENST00000370651ENSG00000146166ENST00000370657ENST00000370658ENST00000622415ENSG00000213312ENST00000416120ENSG00000218048ENST00000402043ENSG00000218274ENST00000403446ENSG00000218617ENST00000406684ENSG00000225121ENST00000444820
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006242 ENSDART00000026814 N/A N/A N/A 99.473±2.43 N/A N/A 18.968±6.00 11.080±5.95 3.573±0.00 N/A 12.212±0.00 N/A N/A N/A
ENSDART00000129843 N/A N/A N/A N/A N/A N/A 94.455±16.87 111.421±22.52 N/A N/A N/A N/A N/A N/A
ENSDART00000148425 N/A N/A N/A N/A N/A N/A N/A N/A 3.172±0.00 N/A N/A N/A N/A N/A
ENSDART00000151926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000007715 ENSDART00000020256 N/A N/A N/A 0.126±0.02 N/A N/A 0.059±0.01 0.150±0.00 0.039±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112245 ENST00000370651 9.176±0.00 8.931±0.00 1.362±0.00 12.162±5.94 15.815±0.09 17.201±3.72 3.377±0.25 31.593±12.61 27.692±9.44 19.677±1.08 29.840±14.31 19.756±3.38 10.036±5.99 10.159±3.07
ENST00000470661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000146166 ENST00000370657 N/A N/A N/A N/A N/A N/A N/A 0.676±0.00 N/A N/A N/A 0.618±0.51 0.571±0.25 0.265±0.00
ENST00000370658 0.014±0.00 0.060±0.00 N/A 0.009±0.00 0.018±0.00 0.020±0.00 0.009±0.00 0.033±0.00 0.015±0.00 0.034±0.00 N/A N/A N/A 0.051±0.00
ENST00000485906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622415 N/A N/A 0.721±0.00 0.024±0.00 N/A 0.183±0.00 N/A N/A N/A 0.341±0.00 N/A N/A 0.156±0.00 N/A
ENSG00000213312 ENST00000416120 N/A N/A N/A 0.026±0.00 0.050±0.00 0.090±0.00 0.022±0.00 1.238±0.00 N/A 0.070±0.00 N/A N/A 0.039±0.00 0.111±0.09
ENSG00000218048 ENST00000402043 N/A N/A N/A N/A 0.035±0.00 0.218±0.16 N/A N/A N/A N/A N/A 0.063±0.02 N/A 0.044±0.01
ENSG00000218274 ENST00000403446 N/A N/A N/A N/A 0.011±0.00 0.281±0.10 N/A N/A N/A N/A N/A 0.095±0.03 0.056±0.00 0.089±0.00
ENSG00000218617 ENST00000406684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A
ENSG00000225121 ENST00000444820 N/A 0.023±0.00 N/A N/A 0.223±0.00 N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 0.040±0.00

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