Institute of Cardiovascular Regeneration Webtool Repository

Notice (8): Undefined index: CIL_000649_0001 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_000649_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000037025' => 'nuclear receptor subfamily 3, group C, member 2',
		'ENSDARG00000091223' => 'Uncharacterized protein',
		'ENSG00000151623' => 'nuclear receptor subfamily 3, group C, member 2',
		'ENSG00000170390' => 'doublecortin-like kinase 2',
		'ENSG00000201846' => 'RNA, 5S ribosomal pseudogene 166',
		'ENSG00000202331' => 'RNA, 5S ribosomal pseudogene 167',
		'ENSG00000207121' => 'RNA, U6 small nuclear 1230, pseudogene',
		'ENSG00000225176' => 'ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 4',
		'ENSG00000234828' => null,
		'ENSG00000238721' => 'RNA, U7 small nuclear 194 pseudogene',
		'ENSG00000239168' => 'RNA, U7 small nuclear 197 pseudogene',
		'ENSG00000248210' => null,
		'ENSG00000249317' => null,
		'ENSG00000249752' => null,
		'ENSG00000250252' => null,
		'ENSG00000250354' => null,
		'ENSG00000250357' => null,
		'ENSG00000250704' => null,
		'ENSG00000250905' => null,
		'ENSG00000251418' => null,
		'ENSG00000251482' => 'akirin 2 pseudogene 1',
		'ENSG00000279016' => null
	),
	'gene_name_arr' => array(
		'ENSDARG00000037025' => 'nr3c2',
		'ENSDARG00000091223' => 'BX005047.1',
		'ENSG00000151623' => 'NR3C2',
		'ENSG00000170390' => 'DCLK2',
		'ENSG00000201846' => 'RNA5SP166',
		'ENSG00000202331' => 'RNA5SP167',
		'ENSG00000207121' => 'RNU6-1230P',
		'ENSG00000225176' => 'ATP5LP4',
		'ENSG00000234828' => 'RP11-526A4.1',
		'ENSG00000238721' => 'RNU7-194P',
		'ENSG00000239168' => 'RNU7-197P',
		'ENSG00000248210' => 'RP11-24I21.1',
		'ENSG00000249317' => 'CTB-191D16.1',
		'ENSG00000249752' => 'RP11-563M4.1',
		'ENSG00000250252' => 'RP11-342A1.1',
		'ENSG00000250354' => 'RP11-76G10.1',
		'ENSG00000250357' => 'RP11-503L19.1',
		'ENSG00000250704' => 'RP11-423J7.1',
		'ENSG00000250905' => 'RP11-707F2.1',
		'ENSG00000251418' => 'RP11-655B23.1',
		'ENSG00000251482' => 'AKIRIN2P1',
		'ENSG00000279016' => 'RP11-360A10.1'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 6 => 'Adrenal',
		(int) 11 => 'Bladder',
		(int) 16 => 'Brain',
		(int) 27 => 'Breast',
		(int) 35 => 'Colon',
		(int) 41 => 'Heart',
		(int) 52 => 'Kidney',
		(int) 59 => 'Liver',
		(int) 67 => 'Lung',
		(int) 74 => 'Muscle',
		(int) 80 => 'Ovary',
		(int) 89 => 'Placenta',
		(int) 95 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 41,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000053818' => array(
			'start' => '36643724',
			'end' => '36796455',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'nr3c2-201'
		),
		'ENSDART00000125011' => array(
			'start' => '36644018',
			'end' => '36792890',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'nr3c2-202'
		),
		'ENSDART00000129932' => array(
			'start' => '36931333',
			'end' => '36936660',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'nr3c2-001'
		),
		'ENSDART00000151986' => array(
			'start' => '36643724',
			'end' => '36709077',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'nr3c2-002'
		),
		'ENSDART00000046260' => array(
			'start' => '36837390',
			'end' => '36853526',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'BX005047.1-201'
		),
		'ENST00000342437' => array(
			'start' => '148080867',
			'end' => '148442371',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'NR3C2-002'
		),
		'ENST00000344721' => array(
			'start' => '148078762',
			'end' => '148444698',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'NR3C2-001'
		),
		'ENST00000358102' => array(
			'start' => '148078769',
			'end' => '148442520',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'NR3C2-003'
		),
		'ENST00000503174' => array(
			'start' => '148152417',
			'end' => '148154844',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'NR3C2-008'
		),
		'ENST00000503313' => array(
			'start' => '148146588',
			'end' => '148201132',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'NR3C2-007'
		),
		'ENST00000504753' => array(
			'start' => '148194771',
			'end' => '148368470',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'NR3C2-006'
		),
		'ENST00000511528' => array(
			'start' => '148081344',
			'end' => '148436860',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'NR3C2-009'
		),
		'ENST00000512865' => array(
			'start' => '148080193',
			'end' => '148442224',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'NR3C2-004'
		),
		'ENST00000296550' => array(
			'start' => '150078274',
			'end' => '150257457',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'DCLK2-001'
		),
		'ENST00000302176' => array(
			'start' => '150079028',
			'end' => '150257438',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'DCLK2-003'
		),
		'ENST00000411937' => array(
			'start' => '150078989',
			'end' => '150257438',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'DCLK2-002'
		),
		'ENST00000506325' => array(
			'start' => '150079028',
			'end' => '150256247',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'DCLK2-004'
		),
		'ENST00000507694' => array(
			'start' => '150175443',
			'end' => '150198103',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'DCLK2-005'
		),
		'ENST00000364976' => array(
			'start' => '148557947',
			'end' => '148558048',
			'transcript_biotype' => 'rRNA',
			'transcript_name' => 'RNA5SP166-201'
		),
		'ENST00000365461' => array(
			'start' => '149907560',
			'end' => '149907675',
			'transcript_biotype' => 'rRNA',
			'transcript_name' => 'RNA5SP167-201'
		),
		'ENST00000384393' => array(
			'start' => '149934376',
			'end' => '149934483',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU6-1230P-201'
		),
		'ENST00000434169' => array(
			'start' => '148703526',
			'end' => '148703832',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'ATP5LP4-001'
		),
		'ENST00000502345' => array(
			'start' => '149733341',
			'end' => '149815814',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-526A4.1-005'
		),
		'ENST00000506683' => array(
			'start' => '149352017',
			'end' => '149553181',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-526A4.1-002'
		),
		'ENST00000508106' => array(
			'start' => '149587990',
			'end' => '149896233',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-526A4.1-003'
		),
		'ENST00000510975' => array(
			'start' => '149737614',
			'end' => '149815814',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-526A4.1-004'
		),
		'ENST00000511993' => array(
			'start' => '149429932',
			'end' => '149815828',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-526A4.1-001'
		),
		'ENST00000459053' => array(
			'start' => '150209706',
			'end' => '150209768',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU7-194P-201'
		),
		'ENST00000458836' => array(
			'start' => '148991572',
			'end' => '148991633',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU7-197P-201'
		),
		'ENST00000503100' => array(
			'start' => '149154295',
			'end' => '149278123',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-24I21.1-001'
		),
		'ENST00000504394' => array(
			'start' => '148940941',
			'end' => '148942378',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'CTB-191D16.1-001'
		),
		'ENST00000512989' => array(
			'start' => '148940949',
			'end' => '148941777',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CTB-191D16.1-002'
		),
		'ENST00000507849' => array(
			'start' => '149027445',
			'end' => '149062522',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-563M4.1-001'
		),
		'ENST00000504755' => array(
			'start' => '149147802',
			'end' => '149149780',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-342A1.1-001'
		),
		'ENST00000514843' => array(
			'start' => '148146471',
			'end' => '148208880',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP11-76G10.1-001'
		),
		'ENST00000504874' => array(
			'start' => '148693032',
			'end' => '148694323',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-503L19.1-001'
		),
		'ENST00000505586' => array(
			'start' => '149956208',
			'end' => '149958572',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-423J7.1-001'
		),
		'ENST00000505781' => array(
			'start' => '149666057',
			'end' => '149711149',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-707F2.1-001'
		),
		'ENST00000504437' => array(
			'start' => '148526493',
			'end' => '148527139',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-655B23.1-001'
		),
		'ENST00000505898' => array(
			'start' => '149789952',
			'end' => '149790303',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'AKIRIN2P1-001'
		),
		'ENST00000623546' => array(
			'start' => '148819351',
			'end' => '148819956',
			'transcript_biotype' => 'TEC',
			'transcript_name' => 'RP11-360A10.1-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_000649_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_000649_0002' => array(
		'genes_in_region' => array(
			'ENSG00000151623' => array(
				[maximum depth reached]
			),
			'ENSG00000170390' => array(
				[maximum depth reached]
			),
			'ENSG00000201846' => array(
				[maximum depth reached]
			),
			'ENSG00000225176' => array(
				[maximum depth reached]
			),
			'ENSG00000234828' => array(
				[maximum depth reached]
			),
			'ENSG00000248210' => array(
				[maximum depth reached]
			),
			'ENSG00000249317' => array(
				[maximum depth reached]
			),
			'ENSG00000249752' => array(
				[maximum depth reached]
			),
			'ENSG00000250252' => array(
				[maximum depth reached]
			),
			'ENSG00000250354' => array(
				[maximum depth reached]
			),
			'ENSG00000250357' => array(
				[maximum depth reached]
			),
			'ENSG00000250905' => array(
				[maximum depth reached]
			),
			'ENSG00000251418' => array(
				[maximum depth reached]
			),
			'ENSG00000251482' => array(
				[maximum depth reached]
			),
			'ENSG00000279016' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Colon',
			(int) 2 => 'Lung',
			(int) 3 => 'Muscle',
			(int) 4 => 'Placenta',
			(int) 5 => 'Testis',
			(int) 6 => 'Adipose',
			(int) 7 => 'Liver',
			(int) 8 => 'Adipose',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Breast',
			(int) 12 => 'Colon',
			(int) 13 => 'Heart',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Muscle',
			(int) 17 => 'Ovary',
			(int) 18 => 'Placenta',
			(int) 19 => 'Ovary',
			(int) 20 => 'Testis',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Brain',
			(int) 24 => 'Breast',
			(int) 25 => 'Colon',
			(int) 26 => 'Heart',
			(int) 27 => 'Kidney',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Bladder',
			(int) 34 => 'Brain',
			(int) 35 => 'Heart',
			(int) 36 => 'Liver',
			(int) 37 => 'Placenta',
			(int) 38 => 'Testis',
			(int) 39 => 'Adrenal',
			(int) 40 => 'Brain',
			(int) 41 => 'Breast',
			(int) 42 => 'Colon',
			(int) 43 => 'Heart',
			(int) 44 => 'Liver',
			(int) 45 => 'Lung',
			(int) 46 => 'Ovary',
			(int) 47 => 'Placenta',
			(int) 48 => 'Testis',
			(int) 49 => 'Bladder',
			(int) 50 => 'Brain',
			(int) 51 => 'Breast',
			(int) 52 => 'Lung',
			(int) 53 => 'Ovary',
			(int) 54 => 'Liver',
			(int) 55 => 'Muscle',
			(int) 56 => 'Heart',
			(int) 57 => 'Kidney',
			(int) 58 => 'Testis',
			(int) 59 => 'Adipose',
			(int) 60 => 'Adrenal',
			(int) 61 => 'Breast',
			(int) 62 => 'Colon',
			(int) 63 => 'Heart',
			(int) 64 => 'Kidney',
			(int) 65 => 'Liver',
			(int) 66 => 'Ovary',
			(int) 67 => 'Placenta',
			(int) 68 => 'Testis',
			(int) 69 => 'Breast',
			(int) 70 => 'Testis',
			(int) 71 => 'Brain',
			(int) 72 => 'Heart',
			(int) 73 => 'Testis',
			(int) 74 => 'Lung',
			(int) 75 => 'Testis',
			(int) 76 => 'Testis',
			(int) 77 => 'Adipose',
			(int) 78 => 'Brain',
			(int) 79 => 'Breast',
			(int) 80 => 'Kidney',
			(int) 81 => 'Lung',
			(int) 82 => 'Ovary',
			(int) 83 => 'Testis',
			(int) 84 => 'Brain',
			(int) 85 => 'Testis',
			(int) 86 => 'Adrenal',
			(int) 87 => 'Brain',
			(int) 88 => 'Breast',
			(int) 89 => 'Ovary',
			(int) 90 => 'Bladder',
			(int) 91 => 'Heart',
			(int) 92 => 'Testis',
			(int) 93 => 'Colon',
			(int) 94 => 'Muscle',
			(int) 95 => 'Testis',
			(int) 96 => 'Adipose',
			(int) 97 => 'Adrenal',
			(int) 98 => 'Heart',
			(int) 99 => 'Kidney',
			(int) 100 => 'Liver',
			(int) 101 => 'Lung',
			(int) 102 => 'Brain',
			(int) 103 => 'Heart',
			(int) 104 => 'Ovary'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000037025' => 'nuclear receptor subfamily 3, group C, member 2',
	'ENSDARG00000091223' => 'Uncharacterized protein',
	'ENSG00000151623' => 'nuclear receptor subfamily 3, group C, member 2',
	'ENSG00000170390' => 'doublecortin-like kinase 2',
	'ENSG00000201846' => 'RNA, 5S ribosomal pseudogene 166',
	'ENSG00000202331' => 'RNA, 5S ribosomal pseudogene 167',
	'ENSG00000207121' => 'RNA, U6 small nuclear 1230, pseudogene',
	'ENSG00000225176' => 'ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 4',
	'ENSG00000234828' => null,
	'ENSG00000238721' => 'RNA, U7 small nuclear 194 pseudogene',
	'ENSG00000239168' => 'RNA, U7 small nuclear 197 pseudogene',
	'ENSG00000248210' => null,
	'ENSG00000249317' => null,
	'ENSG00000249752' => null,
	'ENSG00000250252' => null,
	'ENSG00000250354' => null,
	'ENSG00000250357' => null,
	'ENSG00000250704' => null,
	'ENSG00000250905' => null,
	'ENSG00000251418' => null,
	'ENSG00000251482' => 'akirin 2 pseudogene 1',
	'ENSG00000279016' => null
)
$gene_name_arr = array(
	'ENSDARG00000037025' => 'nr3c2',
	'ENSDARG00000091223' => 'BX005047.1',
	'ENSG00000151623' => 'NR3C2',
	'ENSG00000170390' => 'DCLK2',
	'ENSG00000201846' => 'RNA5SP166',
	'ENSG00000202331' => 'RNA5SP167',
	'ENSG00000207121' => 'RNU6-1230P',
	'ENSG00000225176' => 'ATP5LP4',
	'ENSG00000234828' => 'RP11-526A4.1',
	'ENSG00000238721' => 'RNU7-194P',
	'ENSG00000239168' => 'RNU7-197P',
	'ENSG00000248210' => 'RP11-24I21.1',
	'ENSG00000249317' => 'CTB-191D16.1',
	'ENSG00000249752' => 'RP11-563M4.1',
	'ENSG00000250252' => 'RP11-342A1.1',
	'ENSG00000250354' => 'RP11-76G10.1',
	'ENSG00000250357' => 'RP11-503L19.1',
	'ENSG00000250704' => 'RP11-423J7.1',
	'ENSG00000250905' => 'RP11-707F2.1',
	'ENSG00000251418' => 'RP11-655B23.1',
	'ENSG00000251482' => 'AKIRIN2P1',
	'ENSG00000279016' => 'RP11-360A10.1'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000649_0001',
			'tax_id' => '7955',
			'chromosome' => '1',
			'seq_start' => '36643724',
			'seq_end' => '36936660',
			'region_length' => '292936',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000037025-ENSDARG00000037025'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000649_0002',
			'tax_id' => '9606',
			'chromosome' => '4',
			'seq_start' => '148078762',
			'seq_end' => '150257457',
			'region_length' => '2178695',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000151623-ENSG00000170390'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 6 => 'Adrenal',
	(int) 11 => 'Bladder',
	(int) 16 => 'Brain',
	(int) 27 => 'Breast',
	(int) 35 => 'Colon',
	(int) 41 => 'Heart',
	(int) 52 => 'Kidney',
	(int) 59 => 'Liver',
	(int) 67 => 'Lung',
	(int) 74 => 'Muscle',
	(int) 80 => 'Ovary',
	(int) 89 => 'Placenta',
	(int) 95 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 41
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000053818' => array(
		'start' => '36643724',
		'end' => '36796455',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'nr3c2-201'
	),
	'ENSDART00000125011' => array(
		'start' => '36644018',
		'end' => '36792890',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'nr3c2-202'
	),
	'ENSDART00000129932' => array(
		'start' => '36931333',
		'end' => '36936660',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'nr3c2-001'
	),
	'ENSDART00000151986' => array(
		'start' => '36643724',
		'end' => '36709077',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'nr3c2-002'
	),
	'ENSDART00000046260' => array(
		'start' => '36837390',
		'end' => '36853526',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'BX005047.1-201'
	),
	'ENST00000342437' => array(
		'start' => '148080867',
		'end' => '148442371',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'NR3C2-002'
	),
	'ENST00000344721' => array(
		'start' => '148078762',
		'end' => '148444698',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'NR3C2-001'
	),
	'ENST00000358102' => array(
		'start' => '148078769',
		'end' => '148442520',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'NR3C2-003'
	),
	'ENST00000503174' => array(
		'start' => '148152417',
		'end' => '148154844',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'NR3C2-008'
	),
	'ENST00000503313' => array(
		'start' => '148146588',
		'end' => '148201132',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'NR3C2-007'
	),
	'ENST00000504753' => array(
		'start' => '148194771',
		'end' => '148368470',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'NR3C2-006'
	),
	'ENST00000511528' => array(
		'start' => '148081344',
		'end' => '148436860',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'NR3C2-009'
	),
	'ENST00000512865' => array(
		'start' => '148080193',
		'end' => '148442224',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'NR3C2-004'
	),
	'ENST00000296550' => array(
		'start' => '150078274',
		'end' => '150257457',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'DCLK2-001'
	),
	'ENST00000302176' => array(
		'start' => '150079028',
		'end' => '150257438',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'DCLK2-003'
	),
	'ENST00000411937' => array(
		'start' => '150078989',
		'end' => '150257438',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'DCLK2-002'
	),
	'ENST00000506325' => array(
		'start' => '150079028',
		'end' => '150256247',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'DCLK2-004'
	),
	'ENST00000507694' => array(
		'start' => '150175443',
		'end' => '150198103',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'DCLK2-005'
	),
	'ENST00000364976' => array(
		'start' => '148557947',
		'end' => '148558048',
		'transcript_biotype' => 'rRNA',
		'transcript_name' => 'RNA5SP166-201'
	),
	'ENST00000365461' => array(
		'start' => '149907560',
		'end' => '149907675',
		'transcript_biotype' => 'rRNA',
		'transcript_name' => 'RNA5SP167-201'
	),
	'ENST00000384393' => array(
		'start' => '149934376',
		'end' => '149934483',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU6-1230P-201'
	),
	'ENST00000434169' => array(
		'start' => '148703526',
		'end' => '148703832',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'ATP5LP4-001'
	),
	'ENST00000502345' => array(
		'start' => '149733341',
		'end' => '149815814',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-526A4.1-005'
	),
	'ENST00000506683' => array(
		'start' => '149352017',
		'end' => '149553181',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-526A4.1-002'
	),
	'ENST00000508106' => array(
		'start' => '149587990',
		'end' => '149896233',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-526A4.1-003'
	),
	'ENST00000510975' => array(
		'start' => '149737614',
		'end' => '149815814',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-526A4.1-004'
	),
	'ENST00000511993' => array(
		'start' => '149429932',
		'end' => '149815828',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-526A4.1-001'
	),
	'ENST00000459053' => array(
		'start' => '150209706',
		'end' => '150209768',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU7-194P-201'
	),
	'ENST00000458836' => array(
		'start' => '148991572',
		'end' => '148991633',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU7-197P-201'
	),
	'ENST00000503100' => array(
		'start' => '149154295',
		'end' => '149278123',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-24I21.1-001'
	),
	'ENST00000504394' => array(
		'start' => '148940941',
		'end' => '148942378',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'CTB-191D16.1-001'
	),
	'ENST00000512989' => array(
		'start' => '148940949',
		'end' => '148941777',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CTB-191D16.1-002'
	),
	'ENST00000507849' => array(
		'start' => '149027445',
		'end' => '149062522',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-563M4.1-001'
	),
	'ENST00000504755' => array(
		'start' => '149147802',
		'end' => '149149780',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-342A1.1-001'
	),
	'ENST00000514843' => array(
		'start' => '148146471',
		'end' => '148208880',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP11-76G10.1-001'
	),
	'ENST00000504874' => array(
		'start' => '148693032',
		'end' => '148694323',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-503L19.1-001'
	),
	'ENST00000505586' => array(
		'start' => '149956208',
		'end' => '149958572',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-423J7.1-001'
	),
	'ENST00000505781' => array(
		'start' => '149666057',
		'end' => '149711149',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-707F2.1-001'
	),
	'ENST00000504437' => array(
		'start' => '148526493',
		'end' => '148527139',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-655B23.1-001'
	),
	'ENST00000505898' => array(
		'start' => '149789952',
		'end' => '149790303',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'AKIRIN2P1-001'
	),
	'ENST00000623546' => array(
		'start' => '148819351',
		'end' => '148819956',
		'transcript_biotype' => 'TEC',
		'transcript_name' => 'RP11-360A10.1-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_000649_0002' => array(
		'genes_in_region' => array(
			'ENSG00000151623' => array(
				[maximum depth reached]
			),
			'ENSG00000170390' => array(
				[maximum depth reached]
			),
			'ENSG00000201846' => array(
				[maximum depth reached]
			),
			'ENSG00000225176' => array(
				[maximum depth reached]
			),
			'ENSG00000234828' => array(
				[maximum depth reached]
			),
			'ENSG00000248210' => array(
				[maximum depth reached]
			),
			'ENSG00000249317' => array(
				[maximum depth reached]
			),
			'ENSG00000249752' => array(
				[maximum depth reached]
			),
			'ENSG00000250252' => array(
				[maximum depth reached]
			),
			'ENSG00000250354' => array(
				[maximum depth reached]
			),
			'ENSG00000250357' => array(
				[maximum depth reached]
			),
			'ENSG00000250905' => array(
				[maximum depth reached]
			),
			'ENSG00000251418' => array(
				[maximum depth reached]
			),
			'ENSG00000251482' => array(
				[maximum depth reached]
			),
			'ENSG00000279016' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Colon',
			(int) 2 => 'Lung',
			(int) 3 => 'Muscle',
			(int) 4 => 'Placenta',
			(int) 5 => 'Testis',
			(int) 6 => 'Adipose',
			(int) 7 => 'Liver',
			(int) 8 => 'Adipose',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Breast',
			(int) 12 => 'Colon',
			(int) 13 => 'Heart',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Muscle',
			(int) 17 => 'Ovary',
			(int) 18 => 'Placenta',
			(int) 19 => 'Ovary',
			(int) 20 => 'Testis',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Brain',
			(int) 24 => 'Breast',
			(int) 25 => 'Colon',
			(int) 26 => 'Heart',
			(int) 27 => 'Kidney',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Bladder',
			(int) 34 => 'Brain',
			(int) 35 => 'Heart',
			(int) 36 => 'Liver',
			(int) 37 => 'Placenta',
			(int) 38 => 'Testis',
			(int) 39 => 'Adrenal',
			(int) 40 => 'Brain',
			(int) 41 => 'Breast',
			(int) 42 => 'Colon',
			(int) 43 => 'Heart',
			(int) 44 => 'Liver',
			(int) 45 => 'Lung',
			(int) 46 => 'Ovary',
			(int) 47 => 'Placenta',
			(int) 48 => 'Testis',
			(int) 49 => 'Bladder',
			(int) 50 => 'Brain',
			(int) 51 => 'Breast',
			(int) 52 => 'Lung',
			(int) 53 => 'Ovary',
			(int) 54 => 'Liver',
			(int) 55 => 'Muscle',
			(int) 56 => 'Heart',
			(int) 57 => 'Kidney',
			(int) 58 => 'Testis',
			(int) 59 => 'Adipose',
			(int) 60 => 'Adrenal',
			(int) 61 => 'Breast',
			(int) 62 => 'Colon',
			(int) 63 => 'Heart',
			(int) 64 => 'Kidney',
			(int) 65 => 'Liver',
			(int) 66 => 'Ovary',
			(int) 67 => 'Placenta',
			(int) 68 => 'Testis',
			(int) 69 => 'Breast',
			(int) 70 => 'Testis',
			(int) 71 => 'Brain',
			(int) 72 => 'Heart',
			(int) 73 => 'Testis',
			(int) 74 => 'Lung',
			(int) 75 => 'Testis',
			(int) 76 => 'Testis',
			(int) 77 => 'Adipose',
			(int) 78 => 'Brain',
			(int) 79 => 'Breast',
			(int) 80 => 'Kidney',
			(int) 81 => 'Lung',
			(int) 82 => 'Ovary',
			(int) 83 => 'Testis',
			(int) 84 => 'Brain',
			(int) 85 => 'Testis',
			(int) 86 => 'Adrenal',
			(int) 87 => 'Brain',
			(int) 88 => 'Breast',
			(int) 89 => 'Ovary',
			(int) 90 => 'Bladder',
			(int) 91 => 'Heart',
			(int) 92 => 'Testis',
			(int) 93 => 'Colon',
			(int) 94 => 'Muscle',
			(int) 95 => 'Testis',
			(int) 96 => 'Adipose',
			(int) 97 => 'Adrenal',
			(int) 98 => 'Heart',
			(int) 99 => 'Kidney',
			(int) 100 => 'Liver',
			(int) 101 => 'Lung',
			(int) 102 => 'Brain',
			(int) 103 => 'Heart',
			(int) 104 => 'Ovary'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_000649_0001',
		'tax_id' => '7955',
		'chromosome' => '1',
		'seq_start' => '36643724',
		'seq_end' => '36936660',
		'region_length' => '292936',
		'region_type' => 'CGP',
		'el_id' => 'ENSDARG00000037025-ENSDARG00000037025'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_000649_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000037025' => 'nuclear receptor subfamily 3, group C, member 2',
		'ENSDARG00000091223' => 'Uncharacterized protein',
		'ENSG00000151623' => 'nuclear receptor subfamily 3, group C, member 2',
		'ENSG00000170390' => 'doublecortin-like kinase 2',
		'ENSG00000201846' => 'RNA, 5S ribosomal pseudogene 166',
		'ENSG00000202331' => 'RNA, 5S ribosomal pseudogene 167',
		'ENSG00000207121' => 'RNA, U6 small nuclear 1230, pseudogene',
		'ENSG00000225176' => 'ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 4',
		'ENSG00000234828' => null,
		'ENSG00000238721' => 'RNA, U7 small nuclear 194 pseudogene',
		'ENSG00000239168' => 'RNA, U7 small nuclear 197 pseudogene',
		'ENSG00000248210' => null,
		'ENSG00000249317' => null,
		'ENSG00000249752' => null,
		'ENSG00000250252' => null,
		'ENSG00000250354' => null,
		'ENSG00000250357' => null,
		'ENSG00000250704' => null,
		'ENSG00000250905' => null,
		'ENSG00000251418' => null,
		'ENSG00000251482' => 'akirin 2 pseudogene 1',
		'ENSG00000279016' => null
	),
	'gene_name_arr' => array(
		'ENSDARG00000037025' => 'nr3c2',
		'ENSDARG00000091223' => 'BX005047.1',
		'ENSG00000151623' => 'NR3C2',
		'ENSG00000170390' => 'DCLK2',
		'ENSG00000201846' => 'RNA5SP166',
		'ENSG00000202331' => 'RNA5SP167',
		'ENSG00000207121' => 'RNU6-1230P',
		'ENSG00000225176' => 'ATP5LP4',
		'ENSG00000234828' => 'RP11-526A4.1',
		'ENSG00000238721' => 'RNU7-194P',
		'ENSG00000239168' => 'RNU7-197P',
		'ENSG00000248210' => 'RP11-24I21.1',
		'ENSG00000249317' => 'CTB-191D16.1',
		'ENSG00000249752' => 'RP11-563M4.1',
		'ENSG00000250252' => 'RP11-342A1.1',
		'ENSG00000250354' => 'RP11-76G10.1',
		'ENSG00000250357' => 'RP11-503L19.1',
		'ENSG00000250704' => 'RP11-423J7.1',
		'ENSG00000250905' => 'RP11-707F2.1',
		'ENSG00000251418' => 'RP11-655B23.1',
		'ENSG00000251482' => 'AKIRIN2P1',
		'ENSG00000279016' => 'RP11-360A10.1'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 6 => 'Adrenal',
		(int) 11 => 'Bladder',
		(int) 16 => 'Brain',
		(int) 27 => 'Breast',
		(int) 35 => 'Colon',
		(int) 41 => 'Heart',
		(int) 52 => 'Kidney',
		(int) 59 => 'Liver',
		(int) 67 => 'Lung',
		(int) 74 => 'Muscle',
		(int) 80 => 'Ovary',
		(int) 89 => 'Placenta',
		(int) 95 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 41,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000053818' => array(
			'start' => '36643724',
			'end' => '36796455',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'nr3c2-201'
		),
		'ENSDART00000125011' => array(
			'start' => '36644018',
			'end' => '36792890',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'nr3c2-202'
		),
		'ENSDART00000129932' => array(
			'start' => '36931333',
			'end' => '36936660',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'nr3c2-001'
		),
		'ENSDART00000151986' => array(
			'start' => '36643724',
			'end' => '36709077',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'nr3c2-002'
		),
		'ENSDART00000046260' => array(
			'start' => '36837390',
			'end' => '36853526',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'BX005047.1-201'
		),
		'ENST00000342437' => array(
			'start' => '148080867',
			'end' => '148442371',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'NR3C2-002'
		),
		'ENST00000344721' => array(
			'start' => '148078762',
			'end' => '148444698',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'NR3C2-001'
		),
		'ENST00000358102' => array(
			'start' => '148078769',
			'end' => '148442520',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'NR3C2-003'
		),
		'ENST00000503174' => array(
			'start' => '148152417',
			'end' => '148154844',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'NR3C2-008'
		),
		'ENST00000503313' => array(
			'start' => '148146588',
			'end' => '148201132',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'NR3C2-007'
		),
		'ENST00000504753' => array(
			'start' => '148194771',
			'end' => '148368470',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'NR3C2-006'
		),
		'ENST00000511528' => array(
			'start' => '148081344',
			'end' => '148436860',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'NR3C2-009'
		),
		'ENST00000512865' => array(
			'start' => '148080193',
			'end' => '148442224',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'NR3C2-004'
		),
		'ENST00000296550' => array(
			'start' => '150078274',
			'end' => '150257457',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'DCLK2-001'
		),
		'ENST00000302176' => array(
			'start' => '150079028',
			'end' => '150257438',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'DCLK2-003'
		),
		'ENST00000411937' => array(
			'start' => '150078989',
			'end' => '150257438',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'DCLK2-002'
		),
		'ENST00000506325' => array(
			'start' => '150079028',
			'end' => '150256247',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'DCLK2-004'
		),
		'ENST00000507694' => array(
			'start' => '150175443',
			'end' => '150198103',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'DCLK2-005'
		),
		'ENST00000364976' => array(
			'start' => '148557947',
			'end' => '148558048',
			'transcript_biotype' => 'rRNA',
			'transcript_name' => 'RNA5SP166-201'
		),
		'ENST00000365461' => array(
			'start' => '149907560',
			'end' => '149907675',
			'transcript_biotype' => 'rRNA',
			'transcript_name' => 'RNA5SP167-201'
		),
		'ENST00000384393' => array(
			'start' => '149934376',
			'end' => '149934483',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU6-1230P-201'
		),
		'ENST00000434169' => array(
			'start' => '148703526',
			'end' => '148703832',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'ATP5LP4-001'
		),
		'ENST00000502345' => array(
			'start' => '149733341',
			'end' => '149815814',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-526A4.1-005'
		),
		'ENST00000506683' => array(
			'start' => '149352017',
			'end' => '149553181',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-526A4.1-002'
		),
		'ENST00000508106' => array(
			'start' => '149587990',
			'end' => '149896233',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-526A4.1-003'
		),
		'ENST00000510975' => array(
			'start' => '149737614',
			'end' => '149815814',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-526A4.1-004'
		),
		'ENST00000511993' => array(
			'start' => '149429932',
			'end' => '149815828',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-526A4.1-001'
		),
		'ENST00000459053' => array(
			'start' => '150209706',
			'end' => '150209768',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU7-194P-201'
		),
		'ENST00000458836' => array(
			'start' => '148991572',
			'end' => '148991633',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'RNU7-197P-201'
		),
		'ENST00000503100' => array(
			'start' => '149154295',
			'end' => '149278123',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-24I21.1-001'
		),
		'ENST00000504394' => array(
			'start' => '148940941',
			'end' => '148942378',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'CTB-191D16.1-001'
		),
		'ENST00000512989' => array(
			'start' => '148940949',
			'end' => '148941777',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CTB-191D16.1-002'
		),
		'ENST00000507849' => array(
			'start' => '149027445',
			'end' => '149062522',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-563M4.1-001'
		),
		'ENST00000504755' => array(
			'start' => '149147802',
			'end' => '149149780',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-342A1.1-001'
		),
		'ENST00000514843' => array(
			'start' => '148146471',
			'end' => '148208880',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP11-76G10.1-001'
		),
		'ENST00000504874' => array(
			'start' => '148693032',
			'end' => '148694323',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-503L19.1-001'
		),
		'ENST00000505586' => array(
			'start' => '149956208',
			'end' => '149958572',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-423J7.1-001'
		),
		'ENST00000505781' => array(
			'start' => '149666057',
			'end' => '149711149',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-707F2.1-001'
		),
		'ENST00000504437' => array(
			'start' => '148526493',
			'end' => '148527139',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-655B23.1-001'
		),
		'ENST00000505898' => array(
			'start' => '149789952',
			'end' => '149790303',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'AKIRIN2P1-001'
		),
		'ENST00000623546' => array(
			'start' => '148819351',
			'end' => '148819956',
			'transcript_biotype' => 'TEC',
			'transcript_name' => 'RP11-360A10.1-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_000649_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_000649_0002' => array(
		'genes_in_region' => array(
			'ENSG00000151623' => array(
				[maximum depth reached]
			),
			'ENSG00000170390' => array(
				[maximum depth reached]
			),
			'ENSG00000201846' => array(
				[maximum depth reached]
			),
			'ENSG00000225176' => array(
				[maximum depth reached]
			),
			'ENSG00000234828' => array(
				[maximum depth reached]
			),
			'ENSG00000248210' => array(
				[maximum depth reached]
			),
			'ENSG00000249317' => array(
				[maximum depth reached]
			),
			'ENSG00000249752' => array(
				[maximum depth reached]
			),
			'ENSG00000250252' => array(
				[maximum depth reached]
			),
			'ENSG00000250354' => array(
				[maximum depth reached]
			),
			'ENSG00000250357' => array(
				[maximum depth reached]
			),
			'ENSG00000250905' => array(
				[maximum depth reached]
			),
			'ENSG00000251418' => array(
				[maximum depth reached]
			),
			'ENSG00000251482' => array(
				[maximum depth reached]
			),
			'ENSG00000279016' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Colon',
			(int) 2 => 'Lung',
			(int) 3 => 'Muscle',
			(int) 4 => 'Placenta',
			(int) 5 => 'Testis',
			(int) 6 => 'Adipose',
			(int) 7 => 'Liver',
			(int) 8 => 'Adipose',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Breast',
			(int) 12 => 'Colon',
			(int) 13 => 'Heart',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Muscle',
			(int) 17 => 'Ovary',
			(int) 18 => 'Placenta',
			(int) 19 => 'Ovary',
			(int) 20 => 'Testis',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Brain',
			(int) 24 => 'Breast',
			(int) 25 => 'Colon',
			(int) 26 => 'Heart',
			(int) 27 => 'Kidney',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Bladder',
			(int) 34 => 'Brain',
			(int) 35 => 'Heart',
			(int) 36 => 'Liver',
			(int) 37 => 'Placenta',
			(int) 38 => 'Testis',
			(int) 39 => 'Adrenal',
			(int) 40 => 'Brain',
			(int) 41 => 'Breast',
			(int) 42 => 'Colon',
			(int) 43 => 'Heart',
			(int) 44 => 'Liver',
			(int) 45 => 'Lung',
			(int) 46 => 'Ovary',
			(int) 47 => 'Placenta',
			(int) 48 => 'Testis',
			(int) 49 => 'Bladder',
			(int) 50 => 'Brain',
			(int) 51 => 'Breast',
			(int) 52 => 'Lung',
			(int) 53 => 'Ovary',
			(int) 54 => 'Liver',
			(int) 55 => 'Muscle',
			(int) 56 => 'Heart',
			(int) 57 => 'Kidney',
			(int) 58 => 'Testis',
			(int) 59 => 'Adipose',
			(int) 60 => 'Adrenal',
			(int) 61 => 'Breast',
			(int) 62 => 'Colon',
			(int) 63 => 'Heart',
			(int) 64 => 'Kidney',
			(int) 65 => 'Liver',
			(int) 66 => 'Ovary',
			(int) 67 => 'Placenta',
			(int) 68 => 'Testis',
			(int) 69 => 'Breast',
			(int) 70 => 'Testis',
			(int) 71 => 'Brain',
			(int) 72 => 'Heart',
			(int) 73 => 'Testis',
			(int) 74 => 'Lung',
			(int) 75 => 'Testis',
			(int) 76 => 'Testis',
			(int) 77 => 'Adipose',
			(int) 78 => 'Brain',
			(int) 79 => 'Breast',
			(int) 80 => 'Kidney',
			(int) 81 => 'Lung',
			(int) 82 => 'Ovary',
			(int) 83 => 'Testis',
			(int) 84 => 'Brain',
			(int) 85 => 'Testis',
			(int) 86 => 'Adrenal',
			(int) 87 => 'Brain',
			(int) 88 => 'Breast',
			(int) 89 => 'Ovary',
			(int) 90 => 'Bladder',
			(int) 91 => 'Heart',
			(int) 92 => 'Testis',
			(int) 93 => 'Colon',
			(int) 94 => 'Muscle',
			(int) 95 => 'Testis',
			(int) 96 => 'Adipose',
			(int) 97 => 'Adrenal',
			(int) 98 => 'Heart',
			(int) 99 => 'Kidney',
			(int) 100 => 'Liver',
			(int) 101 => 'Lung',
			(int) 102 => 'Brain',
			(int) 103 => 'Heart',
			(int) 104 => 'Ovary'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000037025' => 'nuclear receptor subfamily 3, group C, member 2',
	'ENSDARG00000091223' => 'Uncharacterized protein',
	'ENSG00000151623' => 'nuclear receptor subfamily 3, group C, member 2',
	'ENSG00000170390' => 'doublecortin-like kinase 2',
	'ENSG00000201846' => 'RNA, 5S ribosomal pseudogene 166',
	'ENSG00000202331' => 'RNA, 5S ribosomal pseudogene 167',
	'ENSG00000207121' => 'RNA, U6 small nuclear 1230, pseudogene',
	'ENSG00000225176' => 'ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 4',
	'ENSG00000234828' => null,
	'ENSG00000238721' => 'RNA, U7 small nuclear 194 pseudogene',
	'ENSG00000239168' => 'RNA, U7 small nuclear 197 pseudogene',
	'ENSG00000248210' => null,
	'ENSG00000249317' => null,
	'ENSG00000249752' => null,
	'ENSG00000250252' => null,
	'ENSG00000250354' => null,
	'ENSG00000250357' => null,
	'ENSG00000250704' => null,
	'ENSG00000250905' => null,
	'ENSG00000251418' => null,
	'ENSG00000251482' => 'akirin 2 pseudogene 1',
	'ENSG00000279016' => null
)
$gene_name_arr = array(
	'ENSDARG00000037025' => 'nr3c2',
	'ENSDARG00000091223' => 'BX005047.1',
	'ENSG00000151623' => 'NR3C2',
	'ENSG00000170390' => 'DCLK2',
	'ENSG00000201846' => 'RNA5SP166',
	'ENSG00000202331' => 'RNA5SP167',
	'ENSG00000207121' => 'RNU6-1230P',
	'ENSG00000225176' => 'ATP5LP4',
	'ENSG00000234828' => 'RP11-526A4.1',
	'ENSG00000238721' => 'RNU7-194P',
	'ENSG00000239168' => 'RNU7-197P',
	'ENSG00000248210' => 'RP11-24I21.1',
	'ENSG00000249317' => 'CTB-191D16.1',
	'ENSG00000249752' => 'RP11-563M4.1',
	'ENSG00000250252' => 'RP11-342A1.1',
	'ENSG00000250354' => 'RP11-76G10.1',
	'ENSG00000250357' => 'RP11-503L19.1',
	'ENSG00000250704' => 'RP11-423J7.1',
	'ENSG00000250905' => 'RP11-707F2.1',
	'ENSG00000251418' => 'RP11-655B23.1',
	'ENSG00000251482' => 'AKIRIN2P1',
	'ENSG00000279016' => 'RP11-360A10.1'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000649_0001',
			'tax_id' => '7955',
			'chromosome' => '1',
			'seq_start' => '36643724',
			'seq_end' => '36936660',
			'region_length' => '292936',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000037025-ENSDARG00000037025'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000649_0002',
			'tax_id' => '9606',
			'chromosome' => '4',
			'seq_start' => '148078762',
			'seq_end' => '150257457',
			'region_length' => '2178695',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000151623-ENSG00000170390'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 6 => 'Adrenal',
	(int) 11 => 'Bladder',
	(int) 16 => 'Brain',
	(int) 27 => 'Breast',
	(int) 35 => 'Colon',
	(int) 41 => 'Heart',
	(int) 52 => 'Kidney',
	(int) 59 => 'Liver',
	(int) 67 => 'Lung',
	(int) 74 => 'Muscle',
	(int) 80 => 'Ovary',
	(int) 89 => 'Placenta',
	(int) 95 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 41
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000053818' => array(
		'start' => '36643724',
		'end' => '36796455',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'nr3c2-201'
	),
	'ENSDART00000125011' => array(
		'start' => '36644018',
		'end' => '36792890',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'nr3c2-202'
	),
	'ENSDART00000129932' => array(
		'start' => '36931333',
		'end' => '36936660',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'nr3c2-001'
	),
	'ENSDART00000151986' => array(
		'start' => '36643724',
		'end' => '36709077',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'nr3c2-002'
	),
	'ENSDART00000046260' => array(
		'start' => '36837390',
		'end' => '36853526',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'BX005047.1-201'
	),
	'ENST00000342437' => array(
		'start' => '148080867',
		'end' => '148442371',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'NR3C2-002'
	),
	'ENST00000344721' => array(
		'start' => '148078762',
		'end' => '148444698',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'NR3C2-001'
	),
	'ENST00000358102' => array(
		'start' => '148078769',
		'end' => '148442520',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'NR3C2-003'
	),
	'ENST00000503174' => array(
		'start' => '148152417',
		'end' => '148154844',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'NR3C2-008'
	),
	'ENST00000503313' => array(
		'start' => '148146588',
		'end' => '148201132',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'NR3C2-007'
	),
	'ENST00000504753' => array(
		'start' => '148194771',
		'end' => '148368470',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'NR3C2-006'
	),
	'ENST00000511528' => array(
		'start' => '148081344',
		'end' => '148436860',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'NR3C2-009'
	),
	'ENST00000512865' => array(
		'start' => '148080193',
		'end' => '148442224',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'NR3C2-004'
	),
	'ENST00000296550' => array(
		'start' => '150078274',
		'end' => '150257457',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'DCLK2-001'
	),
	'ENST00000302176' => array(
		'start' => '150079028',
		'end' => '150257438',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'DCLK2-003'
	),
	'ENST00000411937' => array(
		'start' => '150078989',
		'end' => '150257438',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'DCLK2-002'
	),
	'ENST00000506325' => array(
		'start' => '150079028',
		'end' => '150256247',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'DCLK2-004'
	),
	'ENST00000507694' => array(
		'start' => '150175443',
		'end' => '150198103',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'DCLK2-005'
	),
	'ENST00000364976' => array(
		'start' => '148557947',
		'end' => '148558048',
		'transcript_biotype' => 'rRNA',
		'transcript_name' => 'RNA5SP166-201'
	),
	'ENST00000365461' => array(
		'start' => '149907560',
		'end' => '149907675',
		'transcript_biotype' => 'rRNA',
		'transcript_name' => 'RNA5SP167-201'
	),
	'ENST00000384393' => array(
		'start' => '149934376',
		'end' => '149934483',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU6-1230P-201'
	),
	'ENST00000434169' => array(
		'start' => '148703526',
		'end' => '148703832',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'ATP5LP4-001'
	),
	'ENST00000502345' => array(
		'start' => '149733341',
		'end' => '149815814',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-526A4.1-005'
	),
	'ENST00000506683' => array(
		'start' => '149352017',
		'end' => '149553181',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-526A4.1-002'
	),
	'ENST00000508106' => array(
		'start' => '149587990',
		'end' => '149896233',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-526A4.1-003'
	),
	'ENST00000510975' => array(
		'start' => '149737614',
		'end' => '149815814',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-526A4.1-004'
	),
	'ENST00000511993' => array(
		'start' => '149429932',
		'end' => '149815828',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-526A4.1-001'
	),
	'ENST00000459053' => array(
		'start' => '150209706',
		'end' => '150209768',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU7-194P-201'
	),
	'ENST00000458836' => array(
		'start' => '148991572',
		'end' => '148991633',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'RNU7-197P-201'
	),
	'ENST00000503100' => array(
		'start' => '149154295',
		'end' => '149278123',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-24I21.1-001'
	),
	'ENST00000504394' => array(
		'start' => '148940941',
		'end' => '148942378',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'CTB-191D16.1-001'
	),
	'ENST00000512989' => array(
		'start' => '148940949',
		'end' => '148941777',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CTB-191D16.1-002'
	),
	'ENST00000507849' => array(
		'start' => '149027445',
		'end' => '149062522',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-563M4.1-001'
	),
	'ENST00000504755' => array(
		'start' => '149147802',
		'end' => '149149780',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-342A1.1-001'
	),
	'ENST00000514843' => array(
		'start' => '148146471',
		'end' => '148208880',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP11-76G10.1-001'
	),
	'ENST00000504874' => array(
		'start' => '148693032',
		'end' => '148694323',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-503L19.1-001'
	),
	'ENST00000505586' => array(
		'start' => '149956208',
		'end' => '149958572',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-423J7.1-001'
	),
	'ENST00000505781' => array(
		'start' => '149666057',
		'end' => '149711149',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-707F2.1-001'
	),
	'ENST00000504437' => array(
		'start' => '148526493',
		'end' => '148527139',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-655B23.1-001'
	),
	'ENST00000505898' => array(
		'start' => '149789952',
		'end' => '149790303',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'AKIRIN2P1-001'
	),
	'ENST00000623546' => array(
		'start' => '148819351',
		'end' => '148819956',
		'transcript_biotype' => 'TEC',
		'transcript_name' => 'RP11-360A10.1-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_000649_0002' => array(
		'genes_in_region' => array(
			'ENSG00000151623' => array(
				[maximum depth reached]
			),
			'ENSG00000170390' => array(
				[maximum depth reached]
			),
			'ENSG00000201846' => array(
				[maximum depth reached]
			),
			'ENSG00000225176' => array(
				[maximum depth reached]
			),
			'ENSG00000234828' => array(
				[maximum depth reached]
			),
			'ENSG00000248210' => array(
				[maximum depth reached]
			),
			'ENSG00000249317' => array(
				[maximum depth reached]
			),
			'ENSG00000249752' => array(
				[maximum depth reached]
			),
			'ENSG00000250252' => array(
				[maximum depth reached]
			),
			'ENSG00000250354' => array(
				[maximum depth reached]
			),
			'ENSG00000250357' => array(
				[maximum depth reached]
			),
			'ENSG00000250905' => array(
				[maximum depth reached]
			),
			'ENSG00000251418' => array(
				[maximum depth reached]
			),
			'ENSG00000251482' => array(
				[maximum depth reached]
			),
			'ENSG00000279016' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Colon',
			(int) 2 => 'Lung',
			(int) 3 => 'Muscle',
			(int) 4 => 'Placenta',
			(int) 5 => 'Testis',
			(int) 6 => 'Adipose',
			(int) 7 => 'Liver',
			(int) 8 => 'Adipose',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Breast',
			(int) 12 => 'Colon',
			(int) 13 => 'Heart',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Muscle',
			(int) 17 => 'Ovary',
			(int) 18 => 'Placenta',
			(int) 19 => 'Ovary',
			(int) 20 => 'Testis',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Brain',
			(int) 24 => 'Breast',
			(int) 25 => 'Colon',
			(int) 26 => 'Heart',
			(int) 27 => 'Kidney',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Bladder',
			(int) 34 => 'Brain',
			(int) 35 => 'Heart',
			(int) 36 => 'Liver',
			(int) 37 => 'Placenta',
			(int) 38 => 'Testis',
			(int) 39 => 'Adrenal',
			(int) 40 => 'Brain',
			(int) 41 => 'Breast',
			(int) 42 => 'Colon',
			(int) 43 => 'Heart',
			(int) 44 => 'Liver',
			(int) 45 => 'Lung',
			(int) 46 => 'Ovary',
			(int) 47 => 'Placenta',
			(int) 48 => 'Testis',
			(int) 49 => 'Bladder',
			(int) 50 => 'Brain',
			(int) 51 => 'Breast',
			(int) 52 => 'Lung',
			(int) 53 => 'Ovary',
			(int) 54 => 'Liver',
			(int) 55 => 'Muscle',
			(int) 56 => 'Heart',
			(int) 57 => 'Kidney',
			(int) 58 => 'Testis',
			(int) 59 => 'Adipose',
			(int) 60 => 'Adrenal',
			(int) 61 => 'Breast',
			(int) 62 => 'Colon',
			(int) 63 => 'Heart',
			(int) 64 => 'Kidney',
			(int) 65 => 'Liver',
			(int) 66 => 'Ovary',
			(int) 67 => 'Placenta',
			(int) 68 => 'Testis',
			(int) 69 => 'Breast',
			(int) 70 => 'Testis',
			(int) 71 => 'Brain',
			(int) 72 => 'Heart',
			(int) 73 => 'Testis',
			(int) 74 => 'Lung',
			(int) 75 => 'Testis',
			(int) 76 => 'Testis',
			(int) 77 => 'Adipose',
			(int) 78 => 'Brain',
			(int) 79 => 'Breast',
			(int) 80 => 'Kidney',
			(int) 81 => 'Lung',
			(int) 82 => 'Ovary',
			(int) 83 => 'Testis',
			(int) 84 => 'Brain',
			(int) 85 => 'Testis',
			(int) 86 => 'Adrenal',
			(int) 87 => 'Brain',
			(int) 88 => 'Breast',
			(int) 89 => 'Ovary',
			(int) 90 => 'Bladder',
			(int) 91 => 'Heart',
			(int) 92 => 'Testis',
			(int) 93 => 'Colon',
			(int) 94 => 'Muscle',
			(int) 95 => 'Testis',
			(int) 96 => 'Adipose',
			(int) 97 => 'Adrenal',
			(int) 98 => 'Heart',
			(int) 99 => 'Kidney',
			(int) 100 => 'Liver',
			(int) 101 => 'Lung',
			(int) 102 => 'Brain',
			(int) 103 => 'Heart',
			(int) 104 => 'Ovary'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_000649_0001',
		'tax_id' => '7955',
		'chromosome' => '1',
		'seq_start' => '36643724',
		'seq_end' => '36936660',
		'region_length' => '292936',
		'region_type' => 'CGP',
		'el_id' => 'ENSDARG00000037025-ENSDARG00000037025'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSDARG00000037025-ENSDARG00000037025		CGP	7955	1:36643724-36936660
Gene		Transcript	Position	Biotype

Source ID	Type	Tax ID	Position
ENSG00000151623-ENSG00000170390	CGP	9606	4:148078762-150257457
Gene	Transcript	Position	Biotype
ENSG00000151623 (NR3C2) nuclear receptor subfamily 3, group C, member 2	ENST00000342437 (NR3C2-002)	148080867-148442371	nonsense_mediated_decay
	ENST00000344721 (NR3C2-001)	148078762-148444698	protein_coding
	ENST00000358102 (NR3C2-003)	148078769-148442520	protein_coding
	ENST00000503174 (NR3C2-008)	148152417-148154844	retained_intron
	ENST00000503313 (NR3C2-007)	148146588-148201132	processed_transcript
	ENST00000504753 (NR3C2-006)	148194771-148368470	processed_transcript
	ENST00000511528 (NR3C2-009)	148081344-148436860	protein_coding
	ENST00000512865 (NR3C2-004)	148080193-148442224	protein_coding
ENSG00000170390 (DCLK2) doublecortin-like kinase 2	ENST00000296550 (DCLK2-001)	150078274-150257457	protein_coding
	ENST00000302176 (DCLK2-003)	150079028-150257438	protein_coding
	ENST00000411937 (DCLK2-002)	150078989-150257438	nonsense_mediated_decay
	ENST00000506325 (DCLK2-004)	150079028-150256247	protein_coding
	ENST00000507694 (DCLK2-005)	150175443-150198103	processed_transcript
ENSG00000201846 (RNA5SP166) RNA, 5S ribosomal pseudogene 166	ENST00000364976 (RNA5SP166-201)	148557947-148558048	rRNA
ENSG00000225176 (ATP5LP4) ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 4	ENST00000434169 (ATP5LP4-001)	148703526-148703832	processed_pseudogene
ENSG00000234828 (RP11-526A4.1)	ENST00000502345 (RP11-526A4.1-005)	149733341-149815814	lincRNA
	ENST00000506683 (RP11-526A4.1-002)	149352017-149553181	lincRNA
	ENST00000508106 (RP11-526A4.1-003)	149587990-149896233	lincRNA
	ENST00000510975 (RP11-526A4.1-004)	149737614-149815814	lincRNA
	ENST00000511993 (RP11-526A4.1-001)	149429932-149815828	lincRNA
ENSG00000248210 (RP11-24I21.1)	ENST00000503100 (RP11-24I21.1-001)	149154295-149278123	lincRNA
ENSG00000249317 (CTB-191D16.1)	ENST00000504394 (CTB-191D16.1-001)	148940941-148942378	lincRNA
ENSG00000249317 (CTB-191D16.1)	ENST00000512989 (CTB-191D16.1-002)	148940949-148941777	retained_intron
ENSG00000249752 (RP11-563M4.1)	ENST00000507849 (RP11-563M4.1-001)	149027445-149062522	lincRNA
ENSG00000250252 (RP11-342A1.1)	ENST00000504755 (RP11-342A1.1-001)	149147802-149149780	lincRNA
ENSG00000250354 (RP11-76G10.1)	ENST00000514843 (RP11-76G10.1-001)	148146471-148208880	antisense
ENSG00000250357 (RP11-503L19.1)	ENST00000504874 (RP11-503L19.1-001)	148693032-148694323	lincRNA
ENSG00000250905 (RP11-707F2.1)	ENST00000505781 (RP11-707F2.1-001)	149666057-149711149	lincRNA
ENSG00000251418 (RP11-655B23.1)	ENST00000504437 (RP11-655B23.1-001)	148526493-148527139	processed_pseudogene
ENSG00000251482 (AKIRIN2P1) akirin 2 pseudogene 1	ENST00000505898 (AKIRIN2P1-001)	149789952-149790303	processed_pseudogene
ENSG00000279016 (RP11-360A10.1)	ENST00000623546 (RP11-360A10.1-001)	148819351-148819956	TEC

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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