C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006EF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000187736-ENSG00000213901 CGP 9606 2:219075317-219170827
GeneTranscriptPositionBiotype
ENSG00000187736 (NHEJ1)
nonhomologous end-joining factor 1 		ENST00000356853 (NHEJ1-001) 219075321-219160853 protein_coding
ENST00000409720 (NHEJ1-004) 219075317-219158362 protein_coding
ENST00000418099 (NHEJ1-006) 219075329-219160798 nonsense_mediated_decay
ENST00000426304 (NHEJ1-009) 219076303-219157621 protein_coding
ENST00000450447 (NHEJ1-005) 219146707-219160865 nonsense_mediated_decay
ENST00000457600 (NHEJ1-008) 219078107-219160555 protein_coding
ENST00000481764 (NHEJ1-007) 219158820-219160762 processed_transcript
ENST00000483627 (NHEJ1-010) 219076378-219125660 processed_transcript
ENST00000491159 (NHEJ1-002) 219076318-219125652 processed_transcript
ENST00000494211 (NHEJ1-003) 219076292-219124764 processed_transcript
ENSG00000213901 (SLC23A3)
solute carrier family 23, member 3 		ENST00000295738 (SLC23A3-001) 219161465-219170095 protein_coding
ENST00000318673 (SLC23A3-003) 219075973-219169987 nonsense_mediated_decay
ENST00000409370 (SLC23A3-008) 219168214-219169990 protein_coding
ENST00000409878 (SLC23A3-010) 219161765-219170017 protein_coding
ENST00000414999 (SLC23A3-011) 219167929-219169562 nonsense_mediated_decay
ENST00000421779 (SLC23A3-004) 219168784-219170035 nonsense_mediated_decay
ENST00000430764 (SLC23A3-007) 219168652-219170004 protein_coding
ENST00000455516 (SLC23A3-005) 219161766-219170032 protein_coding
ENST00000461812 (SLC23A3-006) 219169355-219170029 retained_intron
ENST00000465580 (SLC23A3-009) 219168637-219170033 retained_intron
ENST00000497918 (SLC23A3-002) 219164578-219170057 retained_intron
ENST00000498327 (SLC23A3-012) 219075329-219170827 retained_intron
ENSG00000240317 (RN7SL764P)
RNA, 7SL, cytoplasmic 764, pseudogene 		ENST00000487337 (RN7SL764P-201) 219102434-219102719 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006EF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026162-ENSMUSG00000026205 CGP 10090 1:74967139-75133890
GeneTranscriptPositionBiotype
ENSMUSG00000026162 (Nhej1)
nonhomologous end-joining factor 1 		ENSMUST00000152855 (Nhej1-001) 74967139-75046639 protein_coding
ENSMUST00000188033 (Nhej1-002) 75125136-75125200 processed_transcript
ENSMUSG00000026205 (Slc23a3)
solute carrier family 23 (nucleobase transporters), member 3 		ENSMUST00000027405 (Slc23a3-001) 75125541-75133890 protein_coding
ENSMUST00000188080 (Slc23a3-003) 75131713-75133546 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006EF_0001ENSG00000187736ENST00000356853ENST00000409720ENST00000418099ENST00000426304ENST00000450447ENST00000457600ENST00000481764ENST00000483627ENST00000491159ENST00000494211ENSG00000213901ENST00000295738ENST00000318673ENST00000409370ENST00000409878ENST00000414999ENST00000421779ENST00000430764ENST00000455516ENST00000461812ENST00000465580ENST00000497918ENST00000498327ENSG00000240317ENST00000487337CIL_0006EF_0002ENSMUSG00000026162ENSMUST00000152855ENSMUST00000188033ENSMUSG00000026205ENSMUST00000027405ENSMUST00000188080
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006EF_0001ENSG00000187736ENST00000356853ENST00000409720ENST00000426304ENST00000450447ENST00000457600ENSG00000213901ENST00000295738ENST00000318673ENST00000498327ENSG00000240317ENST00000487337CIL_0006EF_0002ENSMUSG00000026162ENSMUST00000152855ENSMUSG00000026205ENSMUST00000027405ENSMUST00000188080
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000187736 ENST00000356853 2.678±0.00 4.910±0.00 N/A 1.683±0.00 2.657±0.00 5.974±1.91 0.969±0.29 3.015±2.52 1.541±0.48 3.388±0.00 9.984±0.00 4.206±2.75 2.537±1.21 4.689±0.00
ENST00000409720 1.104±0.00 N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A 1.742±0.00 1.202±0.00 1.224±0.00 2.088±0.00 5.085±2.28
ENST00000418099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426304 N/A N/A N/A 1.236±0.00 3.550±0.00 N/A 0.436±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000450447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.194±0.00 3.845±0.00 3.410±0.00 N/A
ENST00000457600 N/A N/A N/A N/A N/A N/A 0.710±0.00 N/A N/A N/A N/A 1.645±0.00 N/A 18.246±0.00
ENST00000481764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213901 ENST00000295738 N/A N/A 2.630±0.00 N/A N/A N/A N/A 3.813±0.00 N/A N/A N/A N/A N/A N/A
ENST00000318673 N/A N/A 2.326±0.00 N/A N/A N/A N/A N/A N/A 0.586±0.00 N/A N/A N/A N/A
ENST00000409370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498327 N/A N/A N/A N/A N/A N/A N/A 1.187±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000240317 ENST00000487337 N/A 0.209±0.00 N/A N/A N/A 0.066±0.00 0.068±0.00 0.362±0.00 N/A 0.413±0.00 0.130±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026162 ENSMUST00000152855 2.337±0.27 2.604±0.63 1.812±0.06 0.971±0.12 2.433±0.46 1.905±0.68 1.638±0.35 1.964±0.51 1.448±0.58 1.534±0.20 2.025±0.43 2.352±0.71 1.605±0.47 3.830±1.31
ENSMUST00000188033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026205 ENSMUST00000027405 0.237±0.16 0.219±0.05 0.492±0.08 0.076±0.07 0.190±0.08 1.395±0.43 0.442±0.14 7.609±2.74 0.661±0.57 0.571±0.21 0.045±0.01 1.130±0.55 5.470±5.85 0.031±0.02
ENSMUST00000188080 0.141±0.00 0.093±0.00 N/A N/A 0.264±0.06 N/A N/A N/A 0.016±0.00 N/A 0.123±0.00 1.077±0.31 N/A 0.078±0.00

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