C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nonhomologous end-joining factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409720 NHEJ1-004 ENSG00000187736 9606 - 2:219075317-219158362 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartLungMuscleOvaryPlacentaTestisENST00000409720
Transcript ID Adipose Heart Lung Muscle Ovary Placenta Testis
ENST00000409720 1.104±0.00 0.395±0.00 1.742±0.00 1.202±0.00 1.224±0.00 2.088±0.00 5.085±2.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HY CIL_0001HY_0002 CGP 2:219054420-219160865
CIL_0006EF CIL_0006EF_0001 CGP 2:219075317-219170827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0006281 IEA DNA repair
GO:0006302 IEA double-strand break repair
GO:0006303 IMP double-strand break repair via nonhomologous end joining
GO:0006310 IEA DNA recombination
GO:0007417 NAS central nervous system development
GO:0010212 IDA response to ionizing radiation
GO:0030183 IMP B cell differentiation
GO:0030217 IMP T cell differentiation
GO:0051351 NAS positive regulation of ligase activity
GO:0070419 IDA nonhomologous end joining complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.00001 57
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.00001 57

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