C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006KE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000059588-ENSG00000168264 CGP 9606 1:234391313-234609525
GeneTranscriptPositionBiotype
ENSG00000059588 (TARBP1)
TAR (HIV-1) RNA binding protein 1 		ENST00000040877 (TARBP1-001) 234391313-234479103 protein_coding
ENST00000462259 (TARBP1-003) 234391378-234406380 processed_transcript
ENST00000463793 (TARBP1-004) 234410404-234420814 processed_transcript
ENST00000468077 (TARBP1-005) 234398382-234405993 processed_transcript
ENST00000471918 (TARBP1-009) 234391598-234392724 processed_transcript
ENST00000481183 (TARBP1-006) 234400251-234410531 processed_transcript
ENST00000483404 (TARBP1-002) 234391339-234407955 processed_transcript
ENST00000484454 (TARBP1-007) 234398178-234400902 processed_transcript
ENST00000496673 (TARBP1-008) 234391410-234401216 processed_transcript
ENSG00000168264 (IRF2BP2)
interferon regulatory factor 2 binding protein 2 		ENST00000366609 (IRF2BP2-002) 234604269-234609525 protein_coding
ENST00000366610 (IRF2BP2-001) 234604269-234609525 protein_coding
ENST00000491430 (IRF2BP2-003) 234607231-234608094 processed_transcript
ENSG00000228830 (RP4-781K5.2)
 ENST00000436039 (RP4-781K5.2-001) 234607008-234609483 antisense
ENSG00000230404 (RP5-855F14.2)
 ENST00000429507 (RP5-855F14.2-001) 234565298-234570088 lincRNA
ENSG00000231768 (LINC01354)
long intergenic non-protein coding RNA 1354 		ENST00000421207 (LINC01354-002) 234529942-234531765 lincRNA
ENST00000435574 (LINC01354-001) 234527891-234531779 lincRNA
CIL_0006KE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000090290-ENSMUSG00000051495 CGP 10090 8:126426652-126593986
GeneTranscriptPositionBiotype
ENSMUSG00000051495 (Irf2bp2)
interferon regulatory factor 2 binding protein 2 		ENSMUST00000054960 (Irf2bp2-001) 126588296-126593986 protein_coding
ENSMUSG00000074026 (Gm6091)
predicted pseudogene 6091 		ENSMUST00000098307 (Gm6091-201) 126476248-126476412 processed_pseudogene
ENSMUSG00000090290 (Gm17296)
predicted gene, 17296 		ENSMUST00000170518 (Gm17296-201) 126426652-126475065 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KE_0001ENSG00000059588ENST00000040877ENST00000462259ENST00000463793ENST00000468077ENST00000471918ENST00000481183ENST00000483404ENST00000484454ENST00000496673ENSG00000168264ENST00000366609ENST00000366610ENST00000491430ENSG00000228830ENST00000436039ENSG00000230404ENST00000429507ENSG00000231768ENST00000421207ENST00000435574CIL_0006KE_0002ENSMUSG00000051495ENSMUST00000054960ENSMUSG00000074026ENSMUST00000098307ENSMUSG00000090290ENSMUST00000170518
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KE_0001ENSG00000059588ENST00000040877ENST00000462259ENST00000483404ENST00000496673ENSG00000168264ENST00000366609ENST00000366610ENSG00000228830ENST00000436039ENSG00000230404ENST00000429507ENSG00000231768ENST00000421207ENST00000435574CIL_0006KE_0002ENSMUSG00000051495ENSMUST00000054960ENSMUSG00000074026ENSMUST00000098307ENSMUSG00000090290ENSMUST00000170518
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000059588 ENST00000040877 0.710±0.00 N/A 0.473±0.00 N/A 1.978±0.00 1.604±0.00 0.725±0.54 0.971±0.26 0.333±0.00 0.884±0.25 0.911±0.00 3.637±3.50 2.318±0.54 2.368±0.22
ENST00000462259 N/A 3.300±0.00 N/A N/A 1.777±0.00 N/A N/A 1.405±0.00 N/A N/A N/A 4.404±2.14 1.460±0.13 1.352±0.00
ENST00000463793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483404 N/A 2.008±0.00 N/A 0.962±0.00 N/A N/A N/A 0.339±0.15 0.216±0.00 1.003±0.30 N/A 2.171±0.75 N/A 2.678±2.08
ENST00000484454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496673 N/A N/A N/A N/A N/A N/A N/A 2.453±0.00 1.041±0.00 N/A 1.008±0.00 N/A N/A N/A
ENSG00000168264 ENST00000366609 6.318±0.00 2.077±0.00 1.961±0.00 5.011±1.16 9.338±3.19 11.857±5.09 5.237±2.14 8.219±5.56 3.747±0.03 7.271±1.53 6.711±4.33 13.503±6.68 7.703±2.09 11.984±2.57
ENST00000366610 6.381±0.00 5.309±0.00 2.793±0.00 3.371±0.00 5.328±3.21 9.785±5.03 5.680±0.00 3.524±0.00 4.454±0.44 5.808±4.26 3.184±1.56 10.831±3.61 4.494±0.38 5.597±3.30
ENST00000491430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228830 ENST00000436039 22.954±0.00 33.247±0.00 N/A 20.519±0.00 25.374±12.58 N/A 35.719±0.00 19.423±9.36 22.253±4.00 35.446±23.29 41.422±17.32 70.944±37.16 33.445±2.76 33.179±3.58
ENSG00000230404 ENST00000429507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.483±0.00
ENSG00000231768 ENST00000421207 N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A N/A N/A N/A 0.212±0.10 N/A
ENST00000435574 0.079±0.00 0.377±0.00 N/A 0.539±0.41 0.591±0.00 0.391±0.00 0.085±0.03 0.078±0.04 0.008±0.00 0.111±0.00 0.359±0.00 0.270±0.02 0.029±0.02 0.150±0.14
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000051495 ENSMUST00000054960 27.824±7.00 46.995±9.05 19.723±0.54 11.052±6.16 31.948±16.42 67.652±10.91 15.859±3.84 23.546±3.77 13.952±2.89 54.422±9.40 4.546±1.24 48.675±20.46 6.867±5.18 1.892±0.87
ENSMUSG00000074026 ENSMUST00000098307 N/A N/A N/A 3.699±0.00 N/A N/A N/A N/A N/A N/A N/A 5.495±0.00 1.016±0.00 N/A
ENSMUSG00000090290 ENSMUST00000170518 N/A 2.439±0.65 N/A 0.277±0.00 1.617±0.00 1.892±1.32 1.180±0.00 1.878±0.00 0.454±0.07 N/A 1.364±0.55 2.482±1.10 0.481±0.10 0.069±0.02

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