C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263102 CCDC6-001 ENSG00000108091 9606 - 10:59788763-59906656 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263102
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263102 8.033±0.00 10.673±0.00 2.068±0.00 7.818±4.51 7.305±3.64 8.670±3.09 3.389±2.55 6.182±4.08 4.362±1.40 5.789±0.98 3.308±2.35 9.054±2.03 6.419±2.63 8.970±4.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PD CIL_0006PD_0002 CGP 10:59650761-59906656
CIL_0002W5 CIL_0002W5_0002 CGP 10:59788763-60733490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008150 ND biological_process
GO:0017124 IEA SH3 domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147545 Ccdc6-001 protein_coding Mus_musculus 0 1770
ENSMUST00000156001 Ccdc6-002 protein_coding Mus_musculus 0 416
ENSMUST00000135607 Ccdc6-003 protein_coding Mus_musculus 0 388
ENSMUST00000145990 Ccdc6-004 retained_intron Mus_musculus 0 224

Loading