C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006R7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139173-ENSG00000184613 CGP 9606 12:43835967-44921848
GeneTranscriptPositionBiotype
ENSG00000139173 (TMEM117)
transmembrane protein 117 		ENST00000266534 (TMEM117-001) 43836098-44389758 protein_coding
ENST00000546387 (TMEM117-005) 43835967-43844984 retained_intron
ENST00000546868 (TMEM117-002) 43836153-44389762 nonsense_mediated_decay
ENST00000546978 (TMEM117-003) 44318295-44389760 processed_transcript
ENST00000550495 (TMEM117-006) 43844851-44388035 protein_coding
ENST00000550623 (TMEM117-007) 44073651-44376656 processed_transcript
ENST00000551577 (TMEM117-004) 43836083-44389758 protein_coding
ENST00000553253 (TMEM117-008) 44073512-44376724 processed_transcript
ENSG00000184613 (NELL2)
NEL-like 2 (chicken) 		ENST00000333837 (NELL2-006) 44508603-44913928 protein_coding
ENST00000395487 (NELL2-201) 44508275-44875654 protein_coding
ENST00000429094 (NELL2-002) 44508278-44876374 protein_coding
ENST00000437801 (NELL2-001) 44508628-44877097 protein_coding
ENST00000452445 (NELL2-010) 44508282-44876355 protein_coding
ENST00000546415 (NELL2-020) 44874999-44876286 retained_intron
ENST00000547172 (NELL2-018) 44779688-44851847 processed_transcript
ENST00000547636 (NELL2-016) 44521962-44523635 retained_intron
ENST00000547751 (NELL2-008) 44665436-44876315 retained_intron
ENST00000548531 (NELL2-019) 44815986-44875812 protein_coding
ENST00000548826 (NELL2-017) 44815909-44876016 protein_coding
ENST00000549027 (NELL2-003) 44508535-44876315 protein_coding
ENST00000549668 (NELL2-014) 44532515-44703780 retained_intron
ENST00000550139 (NELL2-015) 44522777-44532621 protein_coding
ENST00000550313 (NELL2-013) 44610910-44777049 protein_coding
ENST00000550462 (NELL2-012) 44774609-44777122 protein_coding
ENST00000551601 (NELL2-005) 44508282-44876315 protein_coding
ENST00000551949 (NELL2-009) 44875342-44914139 protein_coding
ENST00000552993 (NELL2-007) 44774778-44921848 protein_coding
ENST00000553120 (NELL2-021) 44779849-44875468 protein_coding
ENSG00000257864 (RP11-46I1.2)
 ENST00000548007 (RP11-46I1.2-001) 44248432-44249004 processed_pseudogene
ENSG00000257947 (RP11-46I1.1)
 ENST00000552558 (RP11-46I1.1-001) 44244394-44263982 antisense
ENSG00000258212 (RP11-624G19.1)
 ENST00000546499 (RP11-624G19.1-001) 44008620-44010143 processed_pseudogene
ENSG00000275286 (RP11-499A10.3)
 ENST00000613623 (RP11-499A10.3-001) 44498616-44499158 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006R7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063296-ENSMUSG00000022454 CGP 10090 15:94629185-95528706
GeneTranscriptPositionBiotype
ENSMUSG00000022454 (Nell2)
NEL-like 2 		ENSMUST00000075275 (Nell2-201) 95219933-95528252 protein_coding
ENSMUST00000166170 (Nell2-202) 95219451-95528706 protein_coding
ENSMUSG00000063296 (Tmem117)
transmembrane protein 117 		ENSMUST00000080141 (Tmem117-201) 94629185-95096097 protein_coding
ENSMUSG00000100603 (RP24-303N12.1)
RIKEN cDNA 1700129L04 gene 		ENSMUST00000185302 (RP24-303N12.1-002) 95097616-95149318 sense_intronic
ENSMUST00000189291 (RP24-303N12.1-001) 95097542-95162394 sense_intronic

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006R7_0001ENSG00000139173ENST00000266534ENST00000546387ENST00000546868ENST00000546978ENST00000550495ENST00000551577ENSG00000184613ENST00000333837ENST00000395487ENST00000429094ENST00000437801ENST00000452445ENST00000546415ENST00000547172ENST00000547636ENST00000547751ENST00000548826ENST00000549027ENST00000549668ENST00000550313ENST00000551601ENST00000552993ENST00000553120ENSG00000257864ENST00000548007ENSG00000257947ENST00000552558ENSG00000258212ENST00000546499ENSG00000275286ENST00000613623CIL_0006R7_0002ENSMUSG00000022454ENSMUST00000075275ENSMUST00000166170ENSMUSG00000063296ENSMUST00000080141ENSMUSG00000100603ENSMUST00000185302ENSMUST00000189291
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139173 ENST00000266534 0.896±0.00 0.339±0.00 N/A 0.780±0.15 0.760±0.00 1.330±0.00 0.774±0.34 0.353±0.03 0.312±0.00 N/A N/A 1.298±0.42 1.288±0.10 1.506±0.00
ENST00000546387 N/A N/A 0.463±0.00 N/A N/A N/A N/A N/A N/A 0.312±0.00 0.966±0.00 N/A N/A N/A
ENST00000546868 N/A 0.557±0.00 N/A 0.656±0.45 N/A N/A N/A N/A N/A N/A N/A 0.357±0.09 N/A N/A
ENST00000546978 0.142±0.00 0.728±0.00 N/A 0.583±0.00 0.336±0.00 0.468±0.00 N/A 0.638±0.00 0.470±0.00 0.150±0.05 0.309±0.00 1.050±0.00 0.361±0.09 0.816±0.00
ENST00000550495 N/A N/A N/A N/A N/A N/A N/A N/A 3.576±0.00 N/A N/A N/A N/A N/A
ENST00000550623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551577 N/A 0.173±0.00 0.487±0.00 0.424±0.00 0.474±0.00 N/A 0.702±0.00 0.585±0.00 0.551±0.00 0.422±0.00 N/A 0.666±0.00 N/A 0.882±0.00
ENST00000553253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000184613 ENST00000333837 N/A N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A N/A
ENST00000395487 N/A N/A N/A N/A N/A 0.490±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429094 N/A 1.016±0.00 N/A 24.489±5.63 0.082±0.00 0.354±0.00 N/A N/A N/A 2.550±0.00 N/A 1.271±1.09 N/A 0.327±0.00
ENST00000437801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 0.264±0.00
ENST00000452445 N/A 1.392±0.00 N/A 41.595±0.00 0.183±0.00 0.274±0.00 N/A 0.291±0.00 N/A 2.111±1.74 N/A 4.926±0.00 N/A 1.367±0.00
ENST00000546415 N/A N/A N/A N/A 0.204±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547172 0.069±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547636 N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.00 N/A N/A N/A 0.102±0.00 N/A
ENST00000547751 N/A N/A N/A N/A N/A N/A 0.015±0.00 0.190±0.00 N/A N/A N/A 0.096±0.00 N/A N/A
ENST00000548531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548826 N/A N/A N/A N/A N/A N/A N/A 0.301±0.00 N/A N/A N/A 0.837±0.00 N/A N/A
ENST00000549027 N/A N/A 0.118±0.00 N/A 0.116±0.00 N/A 0.045±0.00 0.286±0.00 0.034±0.00 N/A N/A 0.454±0.00 0.141±0.00 0.389±0.00
ENST00000549668 N/A N/A N/A N/A 0.714±0.00 N/A 0.101±0.05 N/A N/A N/A N/A 12.272±0.00 N/A N/A
ENST00000550139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550313 0.128±0.00 N/A 0.232±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00 0.105±0.00 N/A
ENST00000551949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552993 0.038±0.00 N/A N/A N/A N/A N/A N/A 0.359±0.00 N/A N/A N/A 0.152±0.00 N/A N/A
ENST00000553120 N/A N/A N/A N/A 0.321±0.00 N/A N/A N/A 0.084±0.00 4.025±0.00 N/A N/A 0.185±0.00 N/A
ENSG00000257864 ENST00000548007 N/A N/A 0.112±0.00 N/A 0.619±0.00 0.247±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257947 ENST00000552558 0.065±0.00 0.388±0.00 N/A 0.250±0.00 0.531±0.36 0.233±0.00 0.339±0.00 0.295±0.00 0.064±0.00 0.300±0.00 N/A 1.894±0.00 N/A 0.343±0.00
ENSG00000258212 ENST00000546499 N/A N/A 0.026±0.00 0.017±0.00 0.684±0.00 0.095±0.00 0.090±0.00 0.231±0.00 0.046±0.00 0.345±0.00 0.244±0.00 0.061±0.00 N/A N/A
ENSG00000275286 ENST00000613623 N/A N/A N/A 0.536±0.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022454 ENSMUST00000075275 0.022±0.01 0.106±0.03 0.402±0.07 118.997±100.25 0.021±0.01 0.306±0.15 0.081±0.04 0.036±0.00 0.106±0.03 0.046±0.03 0.027±0.01 0.535±0.34 0.055±0.03 3.945±2.39
ENSMUST00000166170 0.035±0.01 0.321±0.13 0.402±0.00 46.076±18.82 N/A 0.409±0.07 0.060±0.00 0.084±0.04 0.162±0.05 0.095±0.01 0.024±0.00 0.284±0.16 0.059±0.03 2.245±1.60
ENSMUSG00000063296 ENSMUST00000080141 0.225±0.12 0.847±0.39 0.445±0.17 1.076±0.65 0.500±0.03 4.501±0.84 2.679±0.31 3.344±0.34 0.014±0.01 0.960±0.41 5.081±0.43 0.806±0.34 0.059±0.03 0.384±0.13
ENSMUSG00000100603 ENSMUST00000185302 0.055±0.00 N/A N/A N/A N/A 0.096±0.00 N/A 0.039±0.00 N/A N/A N/A N/A N/A 0.029±0.00
ENSMUST00000189291 N/A N/A N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.169±0.08

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