C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000747_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197386-ENSG00000188981 CGP 9606 4:3074681-3271738
GeneTranscriptPositionBiotype
ENSG00000188981 (MSANTD1)
Myb/SANT-like DNA-binding domain containing 1 		ENST00000438480 (MSANTD1-003) 3247476-3256303 protein_coding
ENST00000505599 (MSANTD1-002) 3249040-3271738 nonsense_mediated_decay
ENST00000507492 (MSANTD1-001) 3244369-3256613 protein_coding
ENST00000510580 (MSANTD1-004) 3249159-3262541 protein_coding
ENSG00000197386 (HTT)
huntingtin 		ENST00000355072 (HTT-001) 3074681-3243959 protein_coding
ENST00000502820 (HTT-004) 3203006-3206579 processed_transcript
ENST00000506137 (HTT-006) 3115329-3121712 retained_intron
ENST00000508321 (HTT-003) 3235424-3236179 retained_intron
ENST00000509043 (HTT-012) 3178347-3180794 retained_intron
ENST00000509618 (HTT-011) 3160362-3173227 protein_coding
ENST00000509751 (HTT-009) 3211912-3213055 retained_intron
ENST00000510626 (HTT-002) 3128339-3243940 retained_intron
ENST00000512068 (HTT-010) 3228645-3229922 retained_intron
ENST00000512909 (HTT-013) 3121400-3123466 retained_intron
ENST00000513326 (HTT-005) 3178347-3180787 retained_intron
ENST00000513639 (HTT-008) 3178347-3180673 retained_intron
ENST00000513806 (HTT-007) 3228713-3235396 processed_transcript
CIL_000747_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029104-ENSMUSG00000051246 CGP 10090 5:34761740-34923839
GeneTranscriptPositionBiotype
ENSMUSG00000029104 (Htt)
huntingtin 		ENSMUST00000080036 (Htt-001) 34761744-34912534 protein_coding
ENSMUST00000123755 (Htt-003) 34761761-34814709 retained_intron
ENSMUST00000124272 (Htt-005) 34886451-34903724 retained_intron
ENSMUST00000135039 (Htt-004) 34877192-34884978 retained_intron
ENSMUST00000148953 (Htt-002) 34761740-34820754 retained_intron
ENSMUST00000156490 (Htt-006) 34806728-34811793 retained_intron
ENSMUSG00000051246 (Msantd1)
Myb/SANT-like DNA-binding domain containing 1 		ENSMUST00000050535 (Msantd1-201) 34915915-34923839 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000747_0001ENSG00000188981ENST00000438480ENST00000505599ENST00000507492ENST00000510580ENSG00000197386ENST00000355072ENST00000502820ENST00000506137ENST00000508321ENST00000509043ENST00000509618ENST00000509751ENST00000510626ENST00000512068ENST00000512909ENST00000513326ENST00000513639ENST00000513806CIL_000747_0002ENSMUSG00000029104ENSMUST00000080036ENSMUST00000123755ENSMUST00000124272ENSMUST00000135039ENSMUST00000148953ENSMUST00000156490ENSMUSG00000051246ENSMUST00000050535
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000747_0001ENSG00000188981ENST00000438480ENST00000505599ENST00000507492ENST00000510580ENSG00000197386ENST00000355072ENST00000510626CIL_000747_0002ENSMUSG00000029104ENSMUST00000080036ENSMUSG00000051246ENSMUST00000050535
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000188981 ENST00000438480 N/A 0.033±0.00 0.081±0.00 N/A 0.024±0.00 N/A 0.026±0.00 N/A 0.161±0.00 0.114±0.04 N/A 0.106±0.07 0.054±0.00 0.178±0.02
ENST00000505599 0.054±0.00 0.127±0.00 N/A 0.060±0.00 N/A 0.037±0.00 0.068±0.00 0.057±0.00 0.015±0.00 0.028±0.00 0.116±0.06 0.026±0.01 0.018±0.00 0.096±0.00
ENST00000507492 0.043±0.00 N/A N/A 0.283±0.25 N/A 0.060±0.00 0.051±0.00 0.179±0.00 N/A 0.080±0.00 0.121±0.00 0.060±0.00 0.035±0.00 0.489±0.15
ENST00000510580 N/A 0.044±0.00 0.114±0.00 0.160±0.03 N/A 0.073±0.00 N/A N/A 0.038±0.00 0.041±0.00 0.173±0.00 0.055±0.03 N/A N/A
ENSG00000197386 ENST00000355072 3.524±0.00 3.009±0.00 0.566±0.00 4.299±2.95 2.098±0.94 2.307±1.27 3.112±0.00 2.226±0.72 1.137±0.37 2.819±0.00 6.693±4.69 2.612±1.53 2.498±0.54 5.544±0.20
ENST00000502820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510626 N/A N/A 0.518±0.00 N/A N/A N/A N/A N/A N/A 1.459±0.00 N/A 0.542±0.00 N/A N/A
ENST00000512068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029104 ENSMUST00000080036 4.790±2.56 5.003±3.00 3.581±0.53 8.136±1.58 1.818±0.70 3.434±1.85 1.885±0.41 2.792±1.16 2.437±1.60 5.423±0.94 1.032±0.24 5.333±1.95 3.275±1.11 6.245±2.91
ENSMUST00000123755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051246 ENSMUST00000050535 0.167±0.08 0.718±0.29 N/A 0.686±0.22 0.306±0.22 0.760±0.46 0.131±0.03 0.235±0.08 0.187±0.06 0.357±0.18 0.081±0.04 0.587±0.50 0.178±0.10 0.533±0.25

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