C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00075P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141551-ENSG00000173762 CGP 9606 17:82239023-82317602
GeneTranscriptPositionBiotype
ENSG00000173762 (CD7)
CD7 molecule 		ENST00000312648 (CD7-001) 82314870-82317602 protein_coding
ENST00000578509 (CD7-006) 82315975-82317558 protein_coding
ENST00000581434 (CD7-007) 82316220-82317550 nonsense_mediated_decay
ENST00000581744 (CD7-004) 82316132-82317553 retained_intron
ENST00000582480 (CD7-005) 82316385-82317579 protein_coding
ENST00000583376 (CD7-003) 82314874-82317552 protein_coding
ENST00000584284 (CD7-002) 82314868-82317577 protein_coding
ENSG00000260563 (RP13-516M14.1)
 ENST00000566986 (RP13-516M14.1-001) 82293716-82294910 lincRNA
ENSG00000265692 (RP13-516M14.4)
 ENST00000581489 (RP13-516M14.4-001) 82290046-82292814 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_00075P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025162-ENSMUSG00000025163 CGP 10090 11:120961749-121039418
GeneTranscriptPositionBiotype
ENSMUSG00000025162 (Csnk1d)
casein kinase 1, delta 		ENSMUST00000018274 (Csnk1d-001) 120961749-120991330 protein_coding
ENSMUST00000070575 (Csnk1d-002) 120961749-120991092 protein_coding
ENSMUST00000131375 (Csnk1d-003) 120963648-120965686 processed_transcript
ENSMUST00000139267 (Csnk1d-007) 120967612-120968061 processed_transcript
ENSMUST00000141071 (Csnk1d-008) 120963773-120971625 processed_transcript
ENSMUST00000146837 (Csnk1d-004) 120972490-120990987 nonsense_mediated_decay
ENSMUST00000154483 (Csnk1d-006) 120972472-120990871 protein_coding
ENSMUST00000155070 (Csnk1d-005) 120982857-120991051 retained_intron
ENSMUSG00000025163 (Cd7)
CD7 antigen 		ENSMUST00000026159 (Cd7-001) 121036747-121039418 protein_coding
ENSMUST00000163465 (Cd7-002) 121037885-121039418 retained_intron
ENSMUSG00000080616 (Gm22152)
predicted gene, 22152 		ENSMUST00000116966 (Gm22152-201) 121030858-121030982 snoRNA
ENSMUSG00000081686 (Gm11774)
predicted gene 11774 		ENSMUST00000118601 (Gm11774-001) 121003492-121003784 processed_pseudogene
ENSMUSG00000086835 (Gm11775)
predicted gene 11775 		ENSMUST00000136500 (Gm11775-001) 121029402-121052357 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00075P_0001ENSG00000173762ENST00000312648ENST00000578509ENST00000581434ENST00000581744ENST00000582480ENST00000583376ENST00000584284ENSG00000260563ENST00000566986ENSG00000265692ENST00000581489CIL_00075P_0002ENSMUSG00000025162ENSMUST00000018274ENSMUST00000070575ENSMUST00000131375ENSMUST00000139267ENSMUST00000141071ENSMUST00000146837ENSMUST00000154483ENSMUST00000155070ENSMUSG00000025163ENSMUST00000026159ENSMUST00000163465ENSMUSG00000080616ENSMUST00000116966ENSMUSG00000081686ENSMUST00000118601ENSMUSG00000086835ENSMUST00000136500
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00075P_0001ENSG00000173762ENST00000312648ENST00000578509ENST00000581434ENST00000581744ENST00000582480ENST00000583376ENST00000584284ENSG00000260563ENST00000566986ENSG00000265692ENST00000581489CIL_00075P_0002ENSMUSG00000025162ENSMUST00000018274ENSMUST00000070575ENSMUST00000154483ENSMUSG00000025163ENSMUST00000026159ENSMUST00000163465ENSMUSG00000080616ENSMUST00000116966ENSMUSG00000081686ENSMUST00000118601ENSMUSG00000086835ENSMUST00000136500
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000173762 ENST00000312648 1.389±0.00 13.333±0.00 N/A N/A 0.659±0.00 1.226±0.00 0.169±0.00 0.408±0.00 0.633±0.56 10.057±9.36 0.148±0.00 5.544±4.13 9.037±2.41 0.618±0.00
ENST00000578509 N/A N/A N/A N/A 0.367±0.00 N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A N/A
ENST00000581434 1.733±0.00 18.589±0.00 N/A 0.123±0.00 1.826±0.00 1.181±0.00 N/A N/A N/A N/A N/A 1.666±0.00 N/A 1.991±0.00
ENST00000581744 N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A 0.258±0.00 N/A N/A N/A N/A
ENST00000582480 N/A N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A 0.132±0.00 N/A 0.997±0.00
ENST00000583376 N/A N/A N/A 0.101±0.00 N/A 0.263±0.00 N/A 0.581±0.00 N/A N/A N/A N/A N/A N/A
ENST00000584284 N/A 2.696±0.00 N/A N/A 0.184±0.00 N/A N/A N/A 0.260±0.00 2.791±0.00 N/A N/A N/A N/A
ENSG00000260563 ENST00000566986 4.509±0.00 7.855±0.00 0.789±0.00 3.132±2.65 1.834±0.83 3.250±0.00 0.737±0.00 0.057±0.00 0.475±0.07 2.081±1.14 1.439±1.09 2.894±0.97 1.618±0.42 3.031±0.37
ENSG00000265692 ENST00000581489 0.379±0.00 0.626±0.00 0.025±0.00 0.246±0.00 0.207±0.12 0.219±0.00 0.219±0.00 0.362±0.00 0.139±0.00 0.403±0.00 0.845±0.00 0.060±0.01 0.031±0.00 0.611±0.25
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025162 ENSMUST00000018274 12.289±2.69 17.486±2.74 15.103±0.37 39.743±25.83 10.415±3.61 9.491±2.78 7.368±0.89 12.106±0.99 8.047±3.44 11.440±2.43 7.819±1.27 22.272±5.47 13.128±1.28 31.250±13.44
ENSMUST00000070575 30.765±7.07 11.924±3.52 39.232±0.49 12.554±2.79 18.084±4.04 32.834±3.33 5.575±0.71 12.894±1.28 13.925±3.07 27.242±4.69 7.806±1.12 27.856±6.24 33.550±10.10 3.174±0.00
ENSMUST00000131375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 74.367±0.00
ENSMUST00000155070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025163 ENSMUST00000026159 1.334±0.79 0.605±0.31 0.469±0.14 0.067±0.07 12.051±4.64 3.183±1.45 0.455±0.29 0.779±0.47 0.650±0.42 2.944±0.61 0.267±0.23 2.579±1.34 0.145±0.07 0.688±0.00
ENSMUST00000163465 0.350±0.15 1.446±1.10 0.146±0.00 0.005±0.00 N/A N/A 0.511±0.00 0.404±0.00 0.737±0.47 N/A 0.168±0.00 1.380±0.61 0.124±0.00 N/A
ENSMUSG00000080616 ENSMUST00000116966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 496.968±472.75
ENSMUSG00000081686 ENSMUST00000118601 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.292±0.00 N/A N/A N/A N/A
ENSMUSG00000086835 ENSMUST00000136500 N/A N/A N/A N/A N/A 1.554±0.00 N/A 0.148±0.05 N/A N/A N/A N/A N/A 2.083±0.94

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