C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: casein kinase 1, delta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025162 Csnk1d 10090 - 11:120961749-120991330 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018274 Csnk1d-001 120961749-120991330 protein_coding
  ENSMUST00000070575 Csnk1d-002 120961749-120991092 protein_coding
  ENSMUST00000131375 Csnk1d-003 120963648-120965686 processed_transcript
  ENSMUST00000139267 Csnk1d-007 120967612-120968061 processed_transcript
  ENSMUST00000141071 Csnk1d-008 120963773-120971625 processed_transcript
  ENSMUST00000146837 Csnk1d-004 120972490-120990987 nonsense_mediated_decay
  ENSMUST00000154483 Csnk1d-006 120972472-120990871 protein_coding
  ENSMUST00000155070 Csnk1d-005 120982857-120991051 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018274ENSMUST00000070575ENSMUST00000154483
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018274 12.289±2.69 17.486±2.74 15.103±0.37 39.743±25.83 10.415±3.61 9.491±2.78 7.368±0.89 12.106±0.99 8.047±3.44 11.440±2.43 7.819±1.27 22.272±5.47 13.128±1.28 31.250±13.44
ENSMUST00000070575 30.765±7.07 11.924±3.52 39.232±0.49 12.554±2.79 18.084±4.04 32.834±3.33 5.575±0.71 12.894±1.28 13.925±3.07 27.242±4.69 7.806±1.12 27.856±6.24 33.550±10.10 3.174±0.00
ENSMUST00000154483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 74.367±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043R CIL_00043R_0003 CGP 11:120948480-120991330
CIL_00075P CIL_00075P_0002 CGP 11:120961749-121039418

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001934 IEA positive regulation of protein phosphorylation
GO:0001948 IEA glycoprotein binding
GO:0004672 ISS protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005794 IEA Golgi apparatus
GO:0005813 IEA centrosome
GO:0005819 IEA spindle
GO:0005829 TAS cytosol
GO:0005876 IEA spindle microtubule
GO:0005886 IEA plasma membrane
GO:0006468 ISS protein phosphorylation
GO:0016055 IEA Wnt signaling pathway
GO:0032436 IMP positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032922 IMP circadian regulation of gene expression
GO:0042277 IEA peptide binding
GO:0042752 IMP regulation of circadian rhythm
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050321 IEA tau-protein kinase activity
GO:0051219 IEA phosphoprotein binding
GO:0051225 IEA spindle assembly
GO:0090263 IEA positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006125 csnk1db casein kinase 1, delta b protein_coding Danio_rerio
ENSDARG00000008370 csnk1da casein kinase 1, delta a protein_coding Danio_rerio
ENSG00000141551 CSNK1D casein kinase 1, delta protein_coding Homo_sapiens

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