C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00076O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135898-ENSG00000173699 CGP 9606 2:230907318-231025055
GeneTranscriptPositionBiotype
ENSG00000135898 (GPR55)
G protein-coupled receptor 55 		ENST00000392039 (GPR55-001) 230909866-230961066 protein_coding
ENST00000392040 (GPR55-201) 230907328-230925226 protein_coding
ENST00000438398 (GPR55-003) 230910237-230925226 protein_coding
ENST00000444078 (GPR55-002) 230907318-230925226 nonsense_mediated_decay
ENST00000622008 (GPR55-202) 230907319-230925226 protein_coding
ENSG00000230385 (AC012507.4)
 ENST00000454890 (AC012507.4-001) 230908852-230910102 antisense
ENSG00000235013 (COX20P2)
COX20 cytochrome C oxidase assembly factor pseudogene 2 		ENST00000452636 (COX20P2-001) 230957593-230957950 processed_pseudogene
ENSG00000238062 (SPATA3-AS1)
SPATA3 antisense RNA 1 (head to head) 		ENST00000414876 (SPATA3-AS1-001) 230984368-230996031 lincRNA
ENST00000418330 (SPATA3-AS1-007) 230987979-230996012 lincRNA
ENST00000426904 (SPATA3-AS1-002) 230988045-230996032 lincRNA
ENST00000434094 (SPATA3-AS1-005) 230987793-230996008 lincRNA
ENST00000441063 (SPATA3-AS1-006) 230988128-230995881 lincRNA
ENST00000446741 (SPATA3-AS1-003) 230987642-230996032 lincRNA
ENST00000457803 (SPATA3-AS1-004) 230988171-230996029 lincRNA
CIL_00076O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049608-ENSMUSG00000026226 CGP 10090 1:85938318-86029958
GeneTranscriptPositionBiotype
ENSMUSG00000026224 (4933407L21Rik)
RIKEN cDNA 4933407L21 gene 		ENSMUST00000027426 (4933407L21Rik-001) 85928483-85931754 protein_coding
ENSMUST00000129392 (4933407L21Rik-002) 85928727-85940624 protein_coding
ENSMUST00000188949 (4933407L21Rik-003) 85928886-85931754 retained_intron
ENSMUSG00000026226 (Spata3)
spermatogenesis associated 3 		ENSMUST00000052854 (Spata3-001) 86021942-86029958 protein_coding
ENSMUST00000113344 (Spata3-006) 86021946-86027178 protein_coding
ENSMUST00000125083 (Spata3-004) 86021943-86024666 protein_coding
ENSMUST00000129169 (Spata3-008) 86016816-86024669 processed_transcript
ENSMUST00000130504 (Spata3-002) 86021946-86029958 protein_coding
ENSMUST00000131151 (Spata3-010) 86022105-86029264 protein_coding
ENSMUST00000135440 (Spata3-007) 86021961-86024669 protein_coding
ENSMUST00000149469 (Spata3-009) 86018693-86029248 processed_transcript
ENSMUST00000152501 (Spata3-003) 86021946-86024668 protein_coding
ENSMUST00000153247 (Spata3-005) 86021953-86029921 protein_coding
ENSMUST00000159876 (Spata3-011) 86021960-86029262 protein_coding
ENSMUSG00000049608 (Gpr55)
G protein-coupled receptor 55 		ENSMUST00000086975 (Gpr55-001) 85938318-85961007 protein_coding
ENSMUSG00000099342 (RP24-139E15.2)
predicted gene, 18180 		ENSMUST00000187562 (RP24-139E15.2-001) 86014403-86015886 processed_pseudogene
ENSMUSG00000100108 (RP24-139E15.1)
predicted gene 28100 		ENSMUST00000186560 (RP24-139E15.1-001) 85972365-85986917 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00076O_0001ENSG00000135898ENST00000392039ENST00000392040ENST00000438398ENST00000444078ENST00000622008ENSG00000230385ENST00000454890ENSG00000235013ENST00000452636ENSG00000238062ENST00000414876ENST00000418330ENST00000426904ENST00000434094ENST00000441063ENST00000446741ENST00000457803CIL_00076O_0002ENSMUSG00000026224ENSMUST00000027426ENSMUST00000129392ENSMUST00000188949ENSMUSG00000026226ENSMUST00000052854ENSMUST00000113344ENSMUST00000125083ENSMUST00000129169ENSMUST00000130504ENSMUST00000131151ENSMUST00000135440ENSMUST00000149469ENSMUST00000152501ENSMUST00000153247ENSMUST00000159876ENSMUSG00000049608ENSMUST00000086975ENSMUSG00000099342ENSMUST00000187562ENSMUSG00000100108ENSMUST00000186560
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00076O_0001ENSG00000135898ENST00000392039ENST00000392040ENST00000438398ENST00000444078ENST00000622008ENSG00000230385ENST00000454890ENSG00000235013ENST00000452636ENSG00000238062ENST00000414876ENST00000418330ENST00000426904ENST00000446741ENST00000457803CIL_00076O_0002ENSMUSG00000026224ENSMUST00000027426ENSMUST00000129392ENSMUST00000188949ENSMUSG00000026226ENSMUST00000052854ENSMUST00000113344ENSMUST00000125083ENSMUST00000129169ENSMUST00000130504ENSMUST00000131151ENSMUST00000135440ENSMUST00000149469ENSMUST00000152501ENSMUST00000153247ENSMUST00000159876ENSMUSG00000049608ENSMUST00000086975ENSMUSG00000099342ENSMUST00000187562ENSMUSG00000100108ENSMUST00000186560
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135898 ENST00000392039 N/A N/A N/A 0.295±0.00 0.345±0.00 1.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392040 N/A 1.104±0.00 N/A 0.239±0.00 0.010±0.00 0.054±0.00 N/A 0.143±0.00 0.035±0.02 0.091±0.03 N/A 0.050±0.01 0.040±0.01 0.794±0.00
ENST00000438398 N/A N/A N/A N/A N/A N/A N/A 0.151±0.00 0.136±0.00 0.458±0.00 N/A N/A N/A N/A
ENST00000444078 0.007±0.00 N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A 0.022±0.00 N/A N/A
ENST00000622008 0.007±0.00 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A 0.022±0.00 N/A N/A
ENSG00000230385 ENST00000454890 N/A N/A N/A 0.490±0.01 0.098±0.00 0.255±0.00 N/A N/A N/A 0.206±0.00 N/A 0.166±0.01 0.081±0.00 3.806±0.00
ENSG00000235013 ENST00000452636 N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A 2.428±0.00 0.026±0.00 N/A N/A 0.078±0.00 0.173±0.12
ENSG00000238062 ENST00000414876 N/A 0.032±0.00 N/A 0.023±0.00 N/A N/A N/A N/A N/A 0.017±0.00 N/A 0.036±0.00 N/A 0.581±0.16
ENST00000418330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.527±0.80
ENST00000426904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.510±0.00
ENST00000434094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.100±1.17
ENST00000457803 0.184±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026224 ENSMUST00000027426 0.481±0.00 N/A N/A 1.324±0.57 N/A N/A N/A 0.060±0.02 0.055±0.01 N/A 0.105±0.06 0.277±0.21 0.138±0.00 N/A
ENSMUST00000129392 0.502±0.00 N/A 0.136±0.00 N/A N/A N/A 0.082±0.00 N/A N/A N/A 0.145±0.06 1.049±0.00 0.314±0.00 N/A
ENSMUST00000188949 0.171±0.05 N/A 0.022±0.01 0.558±0.35 0.096±0.00 N/A 0.010±0.00 0.093±0.08 0.037±0.01 N/A 0.034±0.02 0.118±0.03 0.048±0.04 N/A
ENSMUSG00000026226 ENSMUST00000052854 N/A N/A N/A N/A N/A N/A N/A 0.196±0.00 0.042±0.03 N/A N/A N/A N/A N/A
ENSMUST00000113344 N/A N/A N/A 0.042±0.00 N/A N/A 0.090±0.03 N/A N/A 0.012±0.00 N/A 0.095±0.05 0.011±0.00 N/A
ENSMUST00000125083 0.083±0.00 N/A N/A N/A 0.101±0.00 N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A 58.072±0.00
ENSMUST00000129169 N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A 0.072±0.00 N/A N/A 0.271±0.00 0.034±0.00 N/A
ENSMUST00000130504 0.032±0.00 N/A N/A 0.084±0.00 N/A N/A N/A N/A 0.023±0.00 0.034±0.02 N/A 0.068±0.00 N/A 152.279±6.91
ENSMUST00000131151 N/A N/A N/A N/A N/A N/A 0.063±0.00 0.046±0.01 0.029±0.00 0.060±0.00 N/A N/A N/A 152.955±0.00
ENSMUST00000135440 0.074±0.00 N/A N/A N/A 0.049±0.00 N/A 0.114±0.07 0.074±0.00 0.050±0.04 N/A N/A N/A N/A 24.267±0.00
ENSMUST00000149469 0.233±0.00 N/A 0.219±0.00 0.974±0.00 N/A N/A N/A N/A 0.094±0.00 N/A N/A 0.960±0.26 N/A N/A
ENSMUST00000152501 N/A N/A N/A N/A N/A N/A 0.099±0.00 0.141±0.03 N/A N/A N/A N/A N/A 193.913±31.66
ENSMUST00000153247 0.070±0.00 0.057±0.00 N/A 0.114±0.00 0.086±0.00 N/A N/A 0.099±0.00 0.077±0.00 N/A N/A 0.124±0.00 0.029±0.02 24.235±0.00
ENSMUST00000159876 N/A N/A N/A N/A N/A N/A 0.152±0.06 0.166±0.00 N/A N/A N/A N/A N/A 209.663±12.07
ENSMUSG00000049608 ENSMUST00000086975 0.121±0.09 0.740±0.13 0.043±0.01 0.243±0.00 0.418±0.09 0.450±0.07 0.010±0.00 0.019±0.00 0.050±0.04 0.463±0.12 0.020±0.02 0.273±0.11 0.815±1.03 2.178±0.43
ENSMUSG00000099342 ENSMUST00000187562 0.048±0.02 N/A 2.443±0.42 1.249±0.57 0.137±0.00 N/A 0.031±0.01 0.027±0.00 0.455±0.66 0.070±0.01 0.104±0.05 0.323±0.11 0.097±0.11 0.039±0.01
ENSMUSG00000100108 ENSMUST00000186560 N/A 0.262±0.10 N/A N/A 0.323±0.08 0.160±0.00 N/A N/A 0.016±0.00 0.179±0.03 N/A 0.330±0.16 0.011±0.00 0.421±0.21

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