C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007JM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ID4 UCNEbase 9606 6:18536583-20034717
GeneTranscriptPositionBiotype
ENSG00000172201 (ID4)
inhibitor of DNA binding 4, dominant negative helix-loop-helix protein 		ENST00000378700 (ID4-001) 19837386-19840684 protein_coding
ENST00000618493 (ID4-201) 19837441-19839430 protein_coding
ENSG00000214012 (KRT18P38)
keratin 18 pseudogene 38 		ENST00000449496 (KRT18P38-001) 19612755-19614036 processed_pseudogene
ENSG00000217314 (UQCRFS1P3)
ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 3 		ENST00000407697 (UQCRFS1P3-001) 19638040-19638808 processed_pseudogene
ENSG00000217379 (RP11-254A17.1)
 ENST00000402485 (RP11-254A17.1-001) 19143695-19144160 processed_pseudogene
ENSG00000218643 (RPL5P20)
ribosomal protein L5 pseudogene 20 		ENST00000403848 (RPL5P20-001) 19348181-19349076 processed_pseudogene
ENSG00000226786 (RP1-167F1.2)
 ENST00000432171 (RP1-167F1.2-001) 19534944-19839080 antisense
ENSG00000227116 (RP3-471C18.1)
 ENST00000445568 (RP3-471C18.1-001) 19730427-19734567 lincRNA
ENSG00000228412 (RP4-625H18.2)
 ENST00000447250 (RP4-625H18.2-002) 19803371-19804646 lincRNA
ENST00000457670 (RP4-625H18.2-001) 19803607-19804742 lincRNA
ENST00000606628 (RP4-625H18.2-003) 19803680-19804752 lincRNA
ENST00000607233 (RP4-625H18.2-004) 19803716-19804368 lincRNA
ENST00000607810 (RP4-625H18.2-005) 19802164-19804750 lincRNA
ENSG00000231662 (RP11-686D16.1)
 ENST00000443504 (RP11-686D16.1-001) 19290319-19321021 lincRNA
ENSG00000237404 (RP3-471C18.2)
 ENST00000424083 (RP3-471C18.2-001) 19740177-19749693 lincRNA
ENST00000450310 (RP3-471C18.2-002) 19689825-19753113 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007JM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ID4 UCNEbase 10090 13:47310756-48444349
GeneTranscriptPositionBiotype
ENSMUSG00000021379 (Id4)
inhibitor of DNA binding 4 		ENSMUST00000021810 (Id4-201) 48261427-48264036 protein_coding
ENSMUSG00000047324 (4931429P17Rik)
RIKEN cDNA 4931429P17 gene 		ENSMUST00000061899 (4931429P17Rik-001) 47960330-48018608 lincRNA
ENSMUSG00000097326 (A330048O09Rik)
RIKEN cDNA A330048O09 gene 		ENSMUST00000180777 (A330048O09Rik-201) 48272416-48273884 lincRNA
ENSMUSG00000097622 (A330033J07Rik)
RIKEN cDNA A330033J07 gene 		ENSMUST00000180921 (A330033J07Rik-201) 48044231-48262623 lincRNA
ENSMUST00000181053 (A330033J07Rik-202) 48239054-48262081 lincRNA

Mus musculus Ensembl (GRCm38)

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CIL_0007JM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ID4 UCNEbase 7955 16:11519761-11596190
GeneTranscriptPositionBiotype
ENSDARG00000045131 (id4)
inhibitor of DNA binding 4 		ENSDART00000066372 (id4-001) 11571906-11574450 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007JM_0001ENSG00000172201ENST00000378700ENST00000618493ENSG00000214012ENST00000449496ENSG00000217314ENST00000407697ENSG00000217379ENST00000402485ENSG00000218643ENST00000403848ENSG00000226786ENST00000432171ENSG00000227116ENST00000445568ENSG00000228412ENST00000447250ENST00000457670ENST00000606628ENST00000607233ENST00000607810ENSG00000231662ENST00000443504ENSG00000237404ENST00000424083ENST00000450310CIL_0007JM_0002ENSMUSG00000021379ENSMUST00000021810ENSMUSG00000047324ENSMUST00000061899ENSMUSG00000097326ENSMUST00000180777ENSMUSG00000097622ENSMUST00000180921ENSMUST00000181053CIL_0007JM_0003ENSDARG00000045131ENSDART00000066372
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007JM_0001ENSG00000172201ENST00000378700ENST00000618493ENSG00000214012ENST00000449496ENSG00000217314ENST00000407697ENSG00000217379ENST00000402485ENSG00000218643ENST00000403848ENSG00000226786ENST00000432171ENSG00000227116ENST00000445568ENSG00000228412ENST00000447250ENST00000457670ENST00000606628ENST00000607810ENSG00000231662ENST00000443504ENSG00000237404ENST00000424083ENST00000450310CIL_0007JM_0002ENSMUSG00000021379ENSMUST00000021810ENSMUSG00000047324ENSMUST00000061899ENSMUSG00000097326ENSMUST00000180777ENSMUSG00000097622ENSMUST00000180921CIL_0007JM_0003ENSDARG00000045131ENSDART00000066372
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000172201 ENST00000378700 18.570±0.00 8.138±0.00 0.804±0.00 4.898±0.63 11.631±9.37 3.216±1.52 0.827±0.61 4.228±4.12 3.227±2.99 11.397±0.00 1.067±0.00 9.828±7.39 12.289±7.90 21.249±3.73
ENST00000618493 N/A N/A N/A N/A 3.657±0.00 N/A 1.829±1.40 N/A 0.525±0.00 34.763±0.00 0.852±0.00 2.683±0.00 7.630±0.00 N/A
ENSG00000214012 ENST00000449496 N/A N/A N/A N/A 0.064±0.05 0.049±0.00 0.016±0.00 0.035±0.00 0.015±0.00 0.017±0.00 N/A 0.067±0.00 0.041±0.00 0.158±0.13
ENSG00000217314 ENST00000407697 N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000217379 ENST00000402485 0.199±0.00 0.174±0.00 N/A 0.109±0.00 0.175±0.00 0.196±0.00 0.068±0.00 0.215±0.00 0.130±0.00 0.035±0.00 0.097±0.00 0.057±0.00 N/A 0.059±0.00
ENSG00000218643 ENST00000403848 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.010±0.00
ENSG00000226786 ENST00000432171 0.050±0.00 0.108±0.00 N/A 0.030±0.00 0.095±0.01 0.064±0.01 0.025±0.00 0.057±0.00 0.064±0.00 0.516±0.16 N/A 0.377±0.15 0.338±0.00 0.133±0.04
ENSG00000227116 ENST00000445568 N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.155±0.00 0.882±0.00 N/A N/A 0.136±0.00 0.239±0.10
ENSG00000228412 ENST00000447250 N/A N/A N/A 0.135±0.09 N/A 0.246±0.00 N/A 0.137±0.00 N/A N/A N/A N/A N/A N/A
ENST00000457670 N/A N/A N/A 0.307±0.00 N/A 0.140±0.00 0.035±0.00 N/A N/A 2.025±0.00 N/A N/A N/A N/A
ENST00000606628 0.151±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.174±0.00
ENST00000607233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607810 0.032±0.00 0.059±0.00 N/A 0.033±0.00 0.035±0.00 N/A N/A 0.079±0.00 0.033±0.00 0.658±0.43 N/A 0.243±0.25 0.039±0.02 0.536±0.29
ENSG00000231662 ENST00000443504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.235±0.08
ENSG00000237404 ENST00000424083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.714±0.00 N/A N/A
ENST00000450310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.878±0.00 N/A 0.088±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021379 ENSMUST00000021810 13.852±10.56 2.508±1.03 62.011±9.26 55.794±17.00 5.212±2.65 40.775±6.10 0.714±0.47 27.700±11.13 0.451±0.20 7.917±0.61 0.390±0.13 31.923±13.95 1.025±0.99 19.589±9.30
ENSMUSG00000047324 ENSMUST00000061899 0.038±0.02 N/A 0.015±0.00 0.024±0.00 0.093±0.00 N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A 0.032±0.01
ENSMUSG00000097326 ENSMUST00000180777 0.174±0.16 N/A 2.299±0.17 0.797±0.30 N/A 0.228±0.00 N/A 0.077±0.00 N/A N/A N/A 0.256±0.14 0.105±0.04 0.059±0.02
ENSMUSG00000097622 ENSMUST00000180921 0.195±0.00 N/A N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A
ENSMUST00000181053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000045131 ENSDART00000066372 N/A N/A N/A 22.569±11.76 N/A N/A 2.983±0.31 0.349±0.06 N/A N/A 1.051±0.00 N/A N/A N/A

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