| Source ID |
Type |
Tax ID |
Position |
| BARHL2 |
UCNEbase |
9606 |
1:90087232-90373796  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007KP_0001 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KP_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KP_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KP_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000212459' => 'RNA, U6 small nuclear 695, pseudogene',
'ENSG00000122482' => 'zinc finger protein 644',
'ENSG00000143032' => 'BarH-like homeobox 2',
'ENSG00000199666' => 'Small nucleolar RNA U3',
'ENSG00000225446' => null,
'ENSG00000229201' => null,
'ENSG00000232882' => 'phosphorylase kinase, alpha 1 pseudogene 1',
'ENSG00000233593' => null,
'ENSG00000272094' => null,
'ENSMUSG00000034384' => 'BarH-like 2 (Drosophila)',
'ENSMUSG00000049606' => 'zinc finger protein 644',
'ENSMUSG00000091096' => 'predicted gene, 17304',
'ENSMUSG00000095052' => 'predicted gene, 25672',
'ENSMUSG00000097018' => 'predicted gene, 26872',
'ENSMUSG00000098302' => 'predicted gene, 28039',
'ENSMUSG00000099061' => 'predicted gene, 28050',
'ENSMUSG00000101237' => 'predicted gene 29464',
'ENSDARG00000052254' => 'zinc finger protein 644b',
'ENSDARG00000070129' => 'BarH-like 2',
'ENSDARG00000084010' => '5S ribosomal RNA',
'ENSDARG00000096341' => 'si:ch211-15l16.3'
),
'gene_name_arr' => array(
'ENSG00000212459' => 'RNU6-695P',
'ENSG00000122482' => 'ZNF644',
'ENSG00000143032' => 'BARHL2',
'ENSG00000199666' => 'U3',
'ENSG00000225446' => 'RP4-665J23.2',
'ENSG00000229201' => 'RP5-827O9.1',
'ENSG00000232882' => 'PHKA1P1',
'ENSG00000233593' => 'RP4-665J23.1',
'ENSG00000272094' => 'RP4-665J23.4',
'ENSMUSG00000034384' => 'Barhl2',
'ENSMUSG00000049606' => 'Zfp644',
'ENSMUSG00000091096' => 'Gm17304',
'ENSMUSG00000095052' => 'Gm25672',
'ENSMUSG00000097018' => 'Gm26872',
'ENSMUSG00000098302' => 'Gm28039',
'ENSMUSG00000099061' => 'Gm28050',
'ENSMUSG00000101237' => 'RP24-421H18.4',
'ENSDARG00000052254' => 'znf644b',
'ENSDARG00000070129' => 'barhl2',
'ENSDARG00000084010' => '5S_rRNA',
'ENSDARG00000096341' => 'si:ch211-15l16.3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 28 => 'Brain',
(int) 46 => 'Breast',
(int) 58 => 'Colon',
(int) 68 => 'Heart',
(int) 81 => 'Kidney',
(int) 95 => 'Liver',
(int) 111 => 'Lung',
(int) 122 => 'Muscle',
(int) 134 => 'Ovary',
(int) 149 => 'Placenta',
(int) 165 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 55,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000391157' => array(
'start' => '90253456',
'end' => '90253559',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-695P-201'
),
'ENST00000337393' => array(
'start' => '90915302',
'end' => '91022255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-201'
),
'ENST00000347275' => array(
'start' => '90915304',
'end' => '91021457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-002'
),
'ENST00000361321' => array(
'start' => '90916185',
'end' => '91022272',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-003'
),
'ENST00000370440' => array(
'start' => '90915298',
'end' => '91021473',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-001'
),
'ENST00000467231' => array(
'start' => '90916390',
'end' => '91022014',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-007'
),
'ENST00000474405' => array(
'start' => '90972744',
'end' => '90982370',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-008'
),
'ENST00000479798' => array(
'start' => '90916490',
'end' => '90935528',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-010'
),
'ENST00000482467' => array(
'start' => '91020529',
'end' => '91021725',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-006'
),
'ENST00000482709' => array(
'start' => '90916791',
'end' => '90918391',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-009'
),
'ENST00000495966' => array(
'start' => '91020448',
'end' => '91022055',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-005'
),
'ENST00000498303' => array(
'start' => '90940949',
'end' => '91022081',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-004'
),
'ENST00000621077' => array(
'start' => '90937883',
'end' => '90940120',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-202'
),
'ENST00000370445' => array(
'start' => '90711539',
'end' => '90717237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BARHL2-001'
),
'ENST00000362796' => array(
'start' => '90657750',
'end' => '90657964',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.1-202'
),
'ENST00000425185' => array(
'start' => '90851759',
'end' => '90854286',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.2-001'
),
'ENST00000435832' => array(
'start' => '90510910',
'end' => '90533472',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-827O9.1-001'
),
'ENST00000420457' => array(
'start' => '90892992',
'end' => '90893612',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PHKA1P1-001'
),
'ENST00000435649' => array(
'start' => '90782986',
'end' => '90851515',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.1-004'
),
'ENST00000443802' => array(
'start' => '90831869',
'end' => '90851650',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.1-003'
),
'ENST00000455680' => array(
'start' => '90829547',
'end' => '90836161',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP4-665J23.1-001'
),
'ENST00000606660' => array(
'start' => '90829547',
'end' => '90851618',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP4-665J23.1-002'
),
'ENST00000606898' => array(
'start' => '90860550',
'end' => '90862920',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.4-001'
),
'ENSMUST00000086795' => array(
'start' => '106452523',
'end' => '106458166',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Barhl2-001'
),
'ENSMUST00000045466' => array(
'start' => '106616741',
'end' => '106695975',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-002'
),
'ENSMUST00000112694' => array(
'start' => '106617073',
'end' => '106624390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-019'
),
'ENSMUST00000112695' => array(
'start' => '106616744',
'end' => '106696597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-006'
),
'ENSMUST00000112696' => array(
'start' => '106616739',
'end' => '106696830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-001'
),
'ENSMUST00000112698' => array(
'start' => '106616742',
'end' => '106696830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-201'
),
'ENSMUST00000122980' => array(
'start' => '106638069',
'end' => '106667617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-018'
),
'ENSMUST00000124263' => array(
'start' => '106638284',
'end' => '106696564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-014'
),
'ENSMUST00000125895' => array(
'start' => '106617970',
'end' => '106696805',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-007'
),
'ENSMUST00000127434' => array(
'start' => '106636807',
'end' => '106696826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-003'
),
'ENSMUST00000127572' => array(
'start' => '106690591',
'end' => '106696546',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-015'
),
'ENSMUST00000127932' => array(
'start' => '106695055',
'end' => '106697287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp644-009'
),
'ENSMUST00000135108' => array(
'start' => '106638427',
'end' => '106696650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-008'
),
'ENSMUST00000137285' => array(
'start' => '106637818',
'end' => '106696564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-004'
),
'ENSMUST00000142391' => array(
'start' => '106689820',
'end' => '106696166',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp644-005'
),
'ENSMUST00000148192' => array(
'start' => '106690604',
'end' => '106696544',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-016'
),
'ENSMUST00000155495' => array(
'start' => '106638237',
'end' => '106696650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-010'
),
'ENSMUST00000156851' => array(
'start' => '106695360',
'end' => '106696012',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-017'
),
'ENSMUST00000167618' => array(
'start' => '106609098',
'end' => '106609201',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm17304-201'
),
'ENSMUST00000180111' => array(
'start' => '106072327',
'end' => '106072433',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25672-201'
),
'ENSMUST00000180862' => array(
'start' => '106465800',
'end' => '106471007',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26872-001'
),
'ENSMUST00000149128' => array(
'start' => '106557946',
'end' => '106696571',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm28039-001'
),
'ENSMUST00000124394' => array(
'start' => '106557739',
'end' => '106574718',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm28050-002'
),
'ENSMUST00000131029' => array(
'start' => '106500894',
'end' => '106574715',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm28050-001'
),
'ENSMUST00000187692' => array(
'start' => '106574875',
'end' => '106575387',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421H18.4-001'
),
'ENSDART00000074082' => array(
'start' => '20874033',
'end' => '20910437',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf644b-001'
),
'ENSDART00000102661' => array(
'start' => '21030149',
'end' => '21033978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'barhl2-001'
),
'ENSDART00000139511' => array(
'start' => '21032233',
'end' => '21033832',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'barhl2-002'
),
'ENSDART00000119410' => array(
'start' => '20998124',
'end' => '20998240',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.467-201'
),
'ENSDART00000151146' => array(
'start' => '20955168',
'end' => '21027595',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-001'
),
'ENSDART00000151413' => array(
'start' => '20992332',
'end' => '21027648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-002'
),
'ENSDART00000151820' => array(
'start' => '21007118',
'end' => '21027590',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-003'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KP_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KP_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KP_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KP_0002' => array(
'genes_in_region' => array(
'ENSG00000122482' => array(
[maximum depth reached]
),
'ENSG00000143032' => array(
[maximum depth reached]
),
'ENSG00000199666' => array(
[maximum depth reached]
),
'ENSG00000225446' => array(
[maximum depth reached]
),
'ENSG00000229201' => array(
[maximum depth reached]
),
'ENSG00000232882' => array(
[maximum depth reached]
),
'ENSG00000233593' => array(
[maximum depth reached]
),
'ENSG00000272094' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Breast',
(int) 15 => 'Placenta',
(int) 16 => 'Ovary',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Heart',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Testis',
(int) 34 => 'Adrenal',
(int) 35 => 'Brain',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Adipose',
(int) 55 => 'Colon',
(int) 56 => 'Kidney',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Lung',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Kidney',
(int) 73 => 'Liver',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Adipose',
(int) 79 => 'Adrenal',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis'
)
),
'CIL_0007KP_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000034384' => array(
[maximum depth reached]
),
'ENSMUSG00000049606' => array(
[maximum depth reached]
),
'ENSMUSG00000097018' => array(
[maximum depth reached]
),
'ENSMUSG00000101237' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Testis',
(int) 23 => 'Brain',
(int) 24 => 'Muscle',
(int) 25 => 'Adipose',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Bladder',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Adrenal',
(int) 48 => 'Breast',
(int) 49 => 'Adrenal',
(int) 50 => 'Liver',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adrenal',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Ovary',
(int) 61 => 'Adrenal',
(int) 62 => 'Adrenal',
(int) 63 => 'Breast',
(int) 64 => 'Ovary',
(int) 65 => 'Adrenal',
(int) 66 => 'Brain',
(int) 67 => 'Liver',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Breast',
(int) 71 => 'Liver',
(int) 72 => 'Placenta',
(int) 73 => 'Testis'
)
),
'CIL_0007KP_0004' => array(
'genes_in_region' => array(
'ENSDARG00000052254' => array(
[maximum depth reached]
),
'ENSDARG00000070129' => array(
[maximum depth reached]
),
'ENSDARG00000084010' => array(
[maximum depth reached]
),
'ENSDARG00000096341' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Brain',
(int) 16 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000212459' => 'RNA, U6 small nuclear 695, pseudogene',
'ENSG00000122482' => 'zinc finger protein 644',
'ENSG00000143032' => 'BarH-like homeobox 2',
'ENSG00000199666' => 'Small nucleolar RNA U3',
'ENSG00000225446' => null,
'ENSG00000229201' => null,
'ENSG00000232882' => 'phosphorylase kinase, alpha 1 pseudogene 1',
'ENSG00000233593' => null,
'ENSG00000272094' => null,
'ENSMUSG00000034384' => 'BarH-like 2 (Drosophila)',
'ENSMUSG00000049606' => 'zinc finger protein 644',
'ENSMUSG00000091096' => 'predicted gene, 17304',
'ENSMUSG00000095052' => 'predicted gene, 25672',
'ENSMUSG00000097018' => 'predicted gene, 26872',
'ENSMUSG00000098302' => 'predicted gene, 28039',
'ENSMUSG00000099061' => 'predicted gene, 28050',
'ENSMUSG00000101237' => 'predicted gene 29464',
'ENSDARG00000052254' => 'zinc finger protein 644b',
'ENSDARG00000070129' => 'BarH-like 2',
'ENSDARG00000084010' => '5S ribosomal RNA',
'ENSDARG00000096341' => 'si:ch211-15l16.3'
)
$gene_name_arr = array(
'ENSG00000212459' => 'RNU6-695P',
'ENSG00000122482' => 'ZNF644',
'ENSG00000143032' => 'BARHL2',
'ENSG00000199666' => 'U3',
'ENSG00000225446' => 'RP4-665J23.2',
'ENSG00000229201' => 'RP5-827O9.1',
'ENSG00000232882' => 'PHKA1P1',
'ENSG00000233593' => 'RP4-665J23.1',
'ENSG00000272094' => 'RP4-665J23.4',
'ENSMUSG00000034384' => 'Barhl2',
'ENSMUSG00000049606' => 'Zfp644',
'ENSMUSG00000091096' => 'Gm17304',
'ENSMUSG00000095052' => 'Gm25672',
'ENSMUSG00000097018' => 'Gm26872',
'ENSMUSG00000098302' => 'Gm28039',
'ENSMUSG00000099061' => 'Gm28050',
'ENSMUSG00000101237' => 'RP24-421H18.4',
'ENSDARG00000052254' => 'znf644b',
'ENSDARG00000070129' => 'barhl2',
'ENSDARG00000084010' => '5S_rRNA',
'ENSDARG00000096341' => 'si:ch211-15l16.3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KP_0001',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '90087232',
'seq_end' => '90373796',
'region_length' => '286564',
'region_type' => 'UCNEbase',
'el_id' => 'BARHL2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KP_0002',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '90373797',
'seq_end' => '90945738',
'region_length' => '571941',
'region_type' => 'UCNEbase',
'el_id' => 'BARHL2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KP_0003',
'tax_id' => '10090',
'chromosome' => '5',
'seq_start' => '105961016',
'seq_end' => '106642307',
'region_length' => '681291',
'region_type' => 'UCNEbase',
'el_id' => 'BARHL2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KP_0004',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '20891364',
'seq_end' => '21307786',
'region_length' => '416422',
'region_type' => 'UCNEbase',
'el_id' => 'BARHL2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 28 => 'Brain',
(int) 46 => 'Breast',
(int) 58 => 'Colon',
(int) 68 => 'Heart',
(int) 81 => 'Kidney',
(int) 95 => 'Liver',
(int) 111 => 'Lung',
(int) 122 => 'Muscle',
(int) 134 => 'Ovary',
(int) 149 => 'Placenta',
(int) 165 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 55
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000391157' => array(
'start' => '90253456',
'end' => '90253559',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-695P-201'
),
'ENST00000337393' => array(
'start' => '90915302',
'end' => '91022255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-201'
),
'ENST00000347275' => array(
'start' => '90915304',
'end' => '91021457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-002'
),
'ENST00000361321' => array(
'start' => '90916185',
'end' => '91022272',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-003'
),
'ENST00000370440' => array(
'start' => '90915298',
'end' => '91021473',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-001'
),
'ENST00000467231' => array(
'start' => '90916390',
'end' => '91022014',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-007'
),
'ENST00000474405' => array(
'start' => '90972744',
'end' => '90982370',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-008'
),
'ENST00000479798' => array(
'start' => '90916490',
'end' => '90935528',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-010'
),
'ENST00000482467' => array(
'start' => '91020529',
'end' => '91021725',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-006'
),
'ENST00000482709' => array(
'start' => '90916791',
'end' => '90918391',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-009'
),
'ENST00000495966' => array(
'start' => '91020448',
'end' => '91022055',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-005'
),
'ENST00000498303' => array(
'start' => '90940949',
'end' => '91022081',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-004'
),
'ENST00000621077' => array(
'start' => '90937883',
'end' => '90940120',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-202'
),
'ENST00000370445' => array(
'start' => '90711539',
'end' => '90717237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BARHL2-001'
),
'ENST00000362796' => array(
'start' => '90657750',
'end' => '90657964',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.1-202'
),
'ENST00000425185' => array(
'start' => '90851759',
'end' => '90854286',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.2-001'
),
'ENST00000435832' => array(
'start' => '90510910',
'end' => '90533472',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-827O9.1-001'
),
'ENST00000420457' => array(
'start' => '90892992',
'end' => '90893612',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PHKA1P1-001'
),
'ENST00000435649' => array(
'start' => '90782986',
'end' => '90851515',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.1-004'
),
'ENST00000443802' => array(
'start' => '90831869',
'end' => '90851650',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.1-003'
),
'ENST00000455680' => array(
'start' => '90829547',
'end' => '90836161',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP4-665J23.1-001'
),
'ENST00000606660' => array(
'start' => '90829547',
'end' => '90851618',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP4-665J23.1-002'
),
'ENST00000606898' => array(
'start' => '90860550',
'end' => '90862920',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.4-001'
),
'ENSMUST00000086795' => array(
'start' => '106452523',
'end' => '106458166',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Barhl2-001'
),
'ENSMUST00000045466' => array(
'start' => '106616741',
'end' => '106695975',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-002'
),
'ENSMUST00000112694' => array(
'start' => '106617073',
'end' => '106624390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-019'
),
'ENSMUST00000112695' => array(
'start' => '106616744',
'end' => '106696597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-006'
),
'ENSMUST00000112696' => array(
'start' => '106616739',
'end' => '106696830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-001'
),
'ENSMUST00000112698' => array(
'start' => '106616742',
'end' => '106696830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-201'
),
'ENSMUST00000122980' => array(
'start' => '106638069',
'end' => '106667617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-018'
),
'ENSMUST00000124263' => array(
'start' => '106638284',
'end' => '106696564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-014'
),
'ENSMUST00000125895' => array(
'start' => '106617970',
'end' => '106696805',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-007'
),
'ENSMUST00000127434' => array(
'start' => '106636807',
'end' => '106696826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-003'
),
'ENSMUST00000127572' => array(
'start' => '106690591',
'end' => '106696546',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-015'
),
'ENSMUST00000127932' => array(
'start' => '106695055',
'end' => '106697287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp644-009'
),
'ENSMUST00000135108' => array(
'start' => '106638427',
'end' => '106696650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-008'
),
'ENSMUST00000137285' => array(
'start' => '106637818',
'end' => '106696564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-004'
),
'ENSMUST00000142391' => array(
'start' => '106689820',
'end' => '106696166',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp644-005'
),
'ENSMUST00000148192' => array(
'start' => '106690604',
'end' => '106696544',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-016'
),
'ENSMUST00000155495' => array(
'start' => '106638237',
'end' => '106696650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-010'
),
'ENSMUST00000156851' => array(
'start' => '106695360',
'end' => '106696012',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-017'
),
'ENSMUST00000167618' => array(
'start' => '106609098',
'end' => '106609201',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm17304-201'
),
'ENSMUST00000180111' => array(
'start' => '106072327',
'end' => '106072433',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25672-201'
),
'ENSMUST00000180862' => array(
'start' => '106465800',
'end' => '106471007',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26872-001'
),
'ENSMUST00000149128' => array(
'start' => '106557946',
'end' => '106696571',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm28039-001'
),
'ENSMUST00000124394' => array(
'start' => '106557739',
'end' => '106574718',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm28050-002'
),
'ENSMUST00000131029' => array(
'start' => '106500894',
'end' => '106574715',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm28050-001'
),
'ENSMUST00000187692' => array(
'start' => '106574875',
'end' => '106575387',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421H18.4-001'
),
'ENSDART00000074082' => array(
'start' => '20874033',
'end' => '20910437',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf644b-001'
),
'ENSDART00000102661' => array(
'start' => '21030149',
'end' => '21033978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'barhl2-001'
),
'ENSDART00000139511' => array(
'start' => '21032233',
'end' => '21033832',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'barhl2-002'
),
'ENSDART00000119410' => array(
'start' => '20998124',
'end' => '20998240',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.467-201'
),
'ENSDART00000151146' => array(
'start' => '20955168',
'end' => '21027595',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-001'
),
'ENSDART00000151413' => array(
'start' => '20992332',
'end' => '21027648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-002'
),
'ENSDART00000151820' => array(
'start' => '21007118',
'end' => '21027590',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-003'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KP_0002' => array(
'genes_in_region' => array(
'ENSG00000122482' => array(
[maximum depth reached]
),
'ENSG00000143032' => array(
[maximum depth reached]
),
'ENSG00000199666' => array(
[maximum depth reached]
),
'ENSG00000225446' => array(
[maximum depth reached]
),
'ENSG00000229201' => array(
[maximum depth reached]
),
'ENSG00000232882' => array(
[maximum depth reached]
),
'ENSG00000233593' => array(
[maximum depth reached]
),
'ENSG00000272094' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Breast',
(int) 15 => 'Placenta',
(int) 16 => 'Ovary',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Heart',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Testis',
(int) 34 => 'Adrenal',
(int) 35 => 'Brain',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Adipose',
(int) 55 => 'Colon',
(int) 56 => 'Kidney',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Lung',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Kidney',
(int) 73 => 'Liver',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Adipose',
(int) 79 => 'Adrenal',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis'
)
),
'CIL_0007KP_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000034384' => array(
[maximum depth reached]
),
'ENSMUSG00000049606' => array(
[maximum depth reached]
),
'ENSMUSG00000097018' => array(
[maximum depth reached]
),
'ENSMUSG00000101237' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Testis',
(int) 23 => 'Brain',
(int) 24 => 'Muscle',
(int) 25 => 'Adipose',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Bladder',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Adrenal',
(int) 48 => 'Breast',
(int) 49 => 'Adrenal',
(int) 50 => 'Liver',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adrenal',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Ovary',
(int) 61 => 'Adrenal',
(int) 62 => 'Adrenal',
(int) 63 => 'Breast',
(int) 64 => 'Ovary',
(int) 65 => 'Adrenal',
(int) 66 => 'Brain',
(int) 67 => 'Liver',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Breast',
(int) 71 => 'Liver',
(int) 72 => 'Placenta',
(int) 73 => 'Testis'
)
),
'CIL_0007KP_0004' => array(
'genes_in_region' => array(
'ENSDARG00000052254' => array(
[maximum depth reached]
),
'ENSDARG00000070129' => array(
[maximum depth reached]
),
'ENSDARG00000084010' => array(
[maximum depth reached]
),
'ENSDARG00000096341' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Brain',
(int) 16 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KP_0001',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '90087232',
'seq_end' => '90373796',
'region_length' => '286564',
'region_type' => 'UCNEbase',
'el_id' => 'BARHL2'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KP_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KP_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KP_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000212459' => 'RNA, U6 small nuclear 695, pseudogene',
'ENSG00000122482' => 'zinc finger protein 644',
'ENSG00000143032' => 'BarH-like homeobox 2',
'ENSG00000199666' => 'Small nucleolar RNA U3',
'ENSG00000225446' => null,
'ENSG00000229201' => null,
'ENSG00000232882' => 'phosphorylase kinase, alpha 1 pseudogene 1',
'ENSG00000233593' => null,
'ENSG00000272094' => null,
'ENSMUSG00000034384' => 'BarH-like 2 (Drosophila)',
'ENSMUSG00000049606' => 'zinc finger protein 644',
'ENSMUSG00000091096' => 'predicted gene, 17304',
'ENSMUSG00000095052' => 'predicted gene, 25672',
'ENSMUSG00000097018' => 'predicted gene, 26872',
'ENSMUSG00000098302' => 'predicted gene, 28039',
'ENSMUSG00000099061' => 'predicted gene, 28050',
'ENSMUSG00000101237' => 'predicted gene 29464',
'ENSDARG00000052254' => 'zinc finger protein 644b',
'ENSDARG00000070129' => 'BarH-like 2',
'ENSDARG00000084010' => '5S ribosomal RNA',
'ENSDARG00000096341' => 'si:ch211-15l16.3'
),
'gene_name_arr' => array(
'ENSG00000212459' => 'RNU6-695P',
'ENSG00000122482' => 'ZNF644',
'ENSG00000143032' => 'BARHL2',
'ENSG00000199666' => 'U3',
'ENSG00000225446' => 'RP4-665J23.2',
'ENSG00000229201' => 'RP5-827O9.1',
'ENSG00000232882' => 'PHKA1P1',
'ENSG00000233593' => 'RP4-665J23.1',
'ENSG00000272094' => 'RP4-665J23.4',
'ENSMUSG00000034384' => 'Barhl2',
'ENSMUSG00000049606' => 'Zfp644',
'ENSMUSG00000091096' => 'Gm17304',
'ENSMUSG00000095052' => 'Gm25672',
'ENSMUSG00000097018' => 'Gm26872',
'ENSMUSG00000098302' => 'Gm28039',
'ENSMUSG00000099061' => 'Gm28050',
'ENSMUSG00000101237' => 'RP24-421H18.4',
'ENSDARG00000052254' => 'znf644b',
'ENSDARG00000070129' => 'barhl2',
'ENSDARG00000084010' => '5S_rRNA',
'ENSDARG00000096341' => 'si:ch211-15l16.3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 28 => 'Brain',
(int) 46 => 'Breast',
(int) 58 => 'Colon',
(int) 68 => 'Heart',
(int) 81 => 'Kidney',
(int) 95 => 'Liver',
(int) 111 => 'Lung',
(int) 122 => 'Muscle',
(int) 134 => 'Ovary',
(int) 149 => 'Placenta',
(int) 165 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 55,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000391157' => array(
'start' => '90253456',
'end' => '90253559',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-695P-201'
),
'ENST00000337393' => array(
'start' => '90915302',
'end' => '91022255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-201'
),
'ENST00000347275' => array(
'start' => '90915304',
'end' => '91021457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-002'
),
'ENST00000361321' => array(
'start' => '90916185',
'end' => '91022272',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-003'
),
'ENST00000370440' => array(
'start' => '90915298',
'end' => '91021473',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-001'
),
'ENST00000467231' => array(
'start' => '90916390',
'end' => '91022014',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-007'
),
'ENST00000474405' => array(
'start' => '90972744',
'end' => '90982370',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-008'
),
'ENST00000479798' => array(
'start' => '90916490',
'end' => '90935528',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-010'
),
'ENST00000482467' => array(
'start' => '91020529',
'end' => '91021725',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-006'
),
'ENST00000482709' => array(
'start' => '90916791',
'end' => '90918391',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-009'
),
'ENST00000495966' => array(
'start' => '91020448',
'end' => '91022055',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-005'
),
'ENST00000498303' => array(
'start' => '90940949',
'end' => '91022081',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-004'
),
'ENST00000621077' => array(
'start' => '90937883',
'end' => '90940120',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-202'
),
'ENST00000370445' => array(
'start' => '90711539',
'end' => '90717237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BARHL2-001'
),
'ENST00000362796' => array(
'start' => '90657750',
'end' => '90657964',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.1-202'
),
'ENST00000425185' => array(
'start' => '90851759',
'end' => '90854286',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.2-001'
),
'ENST00000435832' => array(
'start' => '90510910',
'end' => '90533472',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-827O9.1-001'
),
'ENST00000420457' => array(
'start' => '90892992',
'end' => '90893612',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PHKA1P1-001'
),
'ENST00000435649' => array(
'start' => '90782986',
'end' => '90851515',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.1-004'
),
'ENST00000443802' => array(
'start' => '90831869',
'end' => '90851650',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.1-003'
),
'ENST00000455680' => array(
'start' => '90829547',
'end' => '90836161',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP4-665J23.1-001'
),
'ENST00000606660' => array(
'start' => '90829547',
'end' => '90851618',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP4-665J23.1-002'
),
'ENST00000606898' => array(
'start' => '90860550',
'end' => '90862920',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.4-001'
),
'ENSMUST00000086795' => array(
'start' => '106452523',
'end' => '106458166',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Barhl2-001'
),
'ENSMUST00000045466' => array(
'start' => '106616741',
'end' => '106695975',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-002'
),
'ENSMUST00000112694' => array(
'start' => '106617073',
'end' => '106624390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-019'
),
'ENSMUST00000112695' => array(
'start' => '106616744',
'end' => '106696597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-006'
),
'ENSMUST00000112696' => array(
'start' => '106616739',
'end' => '106696830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-001'
),
'ENSMUST00000112698' => array(
'start' => '106616742',
'end' => '106696830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-201'
),
'ENSMUST00000122980' => array(
'start' => '106638069',
'end' => '106667617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-018'
),
'ENSMUST00000124263' => array(
'start' => '106638284',
'end' => '106696564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-014'
),
'ENSMUST00000125895' => array(
'start' => '106617970',
'end' => '106696805',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-007'
),
'ENSMUST00000127434' => array(
'start' => '106636807',
'end' => '106696826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-003'
),
'ENSMUST00000127572' => array(
'start' => '106690591',
'end' => '106696546',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-015'
),
'ENSMUST00000127932' => array(
'start' => '106695055',
'end' => '106697287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp644-009'
),
'ENSMUST00000135108' => array(
'start' => '106638427',
'end' => '106696650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-008'
),
'ENSMUST00000137285' => array(
'start' => '106637818',
'end' => '106696564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-004'
),
'ENSMUST00000142391' => array(
'start' => '106689820',
'end' => '106696166',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp644-005'
),
'ENSMUST00000148192' => array(
'start' => '106690604',
'end' => '106696544',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-016'
),
'ENSMUST00000155495' => array(
'start' => '106638237',
'end' => '106696650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-010'
),
'ENSMUST00000156851' => array(
'start' => '106695360',
'end' => '106696012',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-017'
),
'ENSMUST00000167618' => array(
'start' => '106609098',
'end' => '106609201',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm17304-201'
),
'ENSMUST00000180111' => array(
'start' => '106072327',
'end' => '106072433',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25672-201'
),
'ENSMUST00000180862' => array(
'start' => '106465800',
'end' => '106471007',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26872-001'
),
'ENSMUST00000149128' => array(
'start' => '106557946',
'end' => '106696571',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm28039-001'
),
'ENSMUST00000124394' => array(
'start' => '106557739',
'end' => '106574718',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm28050-002'
),
'ENSMUST00000131029' => array(
'start' => '106500894',
'end' => '106574715',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm28050-001'
),
'ENSMUST00000187692' => array(
'start' => '106574875',
'end' => '106575387',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421H18.4-001'
),
'ENSDART00000074082' => array(
'start' => '20874033',
'end' => '20910437',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf644b-001'
),
'ENSDART00000102661' => array(
'start' => '21030149',
'end' => '21033978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'barhl2-001'
),
'ENSDART00000139511' => array(
'start' => '21032233',
'end' => '21033832',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'barhl2-002'
),
'ENSDART00000119410' => array(
'start' => '20998124',
'end' => '20998240',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.467-201'
),
'ENSDART00000151146' => array(
'start' => '20955168',
'end' => '21027595',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-001'
),
'ENSDART00000151413' => array(
'start' => '20992332',
'end' => '21027648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-002'
),
'ENSDART00000151820' => array(
'start' => '21007118',
'end' => '21027590',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-003'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KP_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KP_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KP_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KP_0002' => array(
'genes_in_region' => array(
'ENSG00000122482' => array(
[maximum depth reached]
),
'ENSG00000143032' => array(
[maximum depth reached]
),
'ENSG00000199666' => array(
[maximum depth reached]
),
'ENSG00000225446' => array(
[maximum depth reached]
),
'ENSG00000229201' => array(
[maximum depth reached]
),
'ENSG00000232882' => array(
[maximum depth reached]
),
'ENSG00000233593' => array(
[maximum depth reached]
),
'ENSG00000272094' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Breast',
(int) 15 => 'Placenta',
(int) 16 => 'Ovary',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Heart',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Testis',
(int) 34 => 'Adrenal',
(int) 35 => 'Brain',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Adipose',
(int) 55 => 'Colon',
(int) 56 => 'Kidney',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Lung',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Kidney',
(int) 73 => 'Liver',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Adipose',
(int) 79 => 'Adrenal',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis'
)
),
'CIL_0007KP_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000034384' => array(
[maximum depth reached]
),
'ENSMUSG00000049606' => array(
[maximum depth reached]
),
'ENSMUSG00000097018' => array(
[maximum depth reached]
),
'ENSMUSG00000101237' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Testis',
(int) 23 => 'Brain',
(int) 24 => 'Muscle',
(int) 25 => 'Adipose',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Bladder',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Adrenal',
(int) 48 => 'Breast',
(int) 49 => 'Adrenal',
(int) 50 => 'Liver',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adrenal',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Ovary',
(int) 61 => 'Adrenal',
(int) 62 => 'Adrenal',
(int) 63 => 'Breast',
(int) 64 => 'Ovary',
(int) 65 => 'Adrenal',
(int) 66 => 'Brain',
(int) 67 => 'Liver',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Breast',
(int) 71 => 'Liver',
(int) 72 => 'Placenta',
(int) 73 => 'Testis'
)
),
'CIL_0007KP_0004' => array(
'genes_in_region' => array(
'ENSDARG00000052254' => array(
[maximum depth reached]
),
'ENSDARG00000070129' => array(
[maximum depth reached]
),
'ENSDARG00000084010' => array(
[maximum depth reached]
),
'ENSDARG00000096341' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Brain',
(int) 16 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000212459' => 'RNA, U6 small nuclear 695, pseudogene',
'ENSG00000122482' => 'zinc finger protein 644',
'ENSG00000143032' => 'BarH-like homeobox 2',
'ENSG00000199666' => 'Small nucleolar RNA U3',
'ENSG00000225446' => null,
'ENSG00000229201' => null,
'ENSG00000232882' => 'phosphorylase kinase, alpha 1 pseudogene 1',
'ENSG00000233593' => null,
'ENSG00000272094' => null,
'ENSMUSG00000034384' => 'BarH-like 2 (Drosophila)',
'ENSMUSG00000049606' => 'zinc finger protein 644',
'ENSMUSG00000091096' => 'predicted gene, 17304',
'ENSMUSG00000095052' => 'predicted gene, 25672',
'ENSMUSG00000097018' => 'predicted gene, 26872',
'ENSMUSG00000098302' => 'predicted gene, 28039',
'ENSMUSG00000099061' => 'predicted gene, 28050',
'ENSMUSG00000101237' => 'predicted gene 29464',
'ENSDARG00000052254' => 'zinc finger protein 644b',
'ENSDARG00000070129' => 'BarH-like 2',
'ENSDARG00000084010' => '5S ribosomal RNA',
'ENSDARG00000096341' => 'si:ch211-15l16.3'
)
$gene_name_arr = array(
'ENSG00000212459' => 'RNU6-695P',
'ENSG00000122482' => 'ZNF644',
'ENSG00000143032' => 'BARHL2',
'ENSG00000199666' => 'U3',
'ENSG00000225446' => 'RP4-665J23.2',
'ENSG00000229201' => 'RP5-827O9.1',
'ENSG00000232882' => 'PHKA1P1',
'ENSG00000233593' => 'RP4-665J23.1',
'ENSG00000272094' => 'RP4-665J23.4',
'ENSMUSG00000034384' => 'Barhl2',
'ENSMUSG00000049606' => 'Zfp644',
'ENSMUSG00000091096' => 'Gm17304',
'ENSMUSG00000095052' => 'Gm25672',
'ENSMUSG00000097018' => 'Gm26872',
'ENSMUSG00000098302' => 'Gm28039',
'ENSMUSG00000099061' => 'Gm28050',
'ENSMUSG00000101237' => 'RP24-421H18.4',
'ENSDARG00000052254' => 'znf644b',
'ENSDARG00000070129' => 'barhl2',
'ENSDARG00000084010' => '5S_rRNA',
'ENSDARG00000096341' => 'si:ch211-15l16.3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KP_0001',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '90087232',
'seq_end' => '90373796',
'region_length' => '286564',
'region_type' => 'UCNEbase',
'el_id' => 'BARHL2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KP_0002',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '90373797',
'seq_end' => '90945738',
'region_length' => '571941',
'region_type' => 'UCNEbase',
'el_id' => 'BARHL2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KP_0003',
'tax_id' => '10090',
'chromosome' => '5',
'seq_start' => '105961016',
'seq_end' => '106642307',
'region_length' => '681291',
'region_type' => 'UCNEbase',
'el_id' => 'BARHL2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KP_0004',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '20891364',
'seq_end' => '21307786',
'region_length' => '416422',
'region_type' => 'UCNEbase',
'el_id' => 'BARHL2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 28 => 'Brain',
(int) 46 => 'Breast',
(int) 58 => 'Colon',
(int) 68 => 'Heart',
(int) 81 => 'Kidney',
(int) 95 => 'Liver',
(int) 111 => 'Lung',
(int) 122 => 'Muscle',
(int) 134 => 'Ovary',
(int) 149 => 'Placenta',
(int) 165 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 55
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000391157' => array(
'start' => '90253456',
'end' => '90253559',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-695P-201'
),
'ENST00000337393' => array(
'start' => '90915302',
'end' => '91022255',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-201'
),
'ENST00000347275' => array(
'start' => '90915304',
'end' => '91021457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-002'
),
'ENST00000361321' => array(
'start' => '90916185',
'end' => '91022272',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-003'
),
'ENST00000370440' => array(
'start' => '90915298',
'end' => '91021473',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-001'
),
'ENST00000467231' => array(
'start' => '90916390',
'end' => '91022014',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-007'
),
'ENST00000474405' => array(
'start' => '90972744',
'end' => '90982370',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-008'
),
'ENST00000479798' => array(
'start' => '90916490',
'end' => '90935528',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-010'
),
'ENST00000482467' => array(
'start' => '91020529',
'end' => '91021725',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-006'
),
'ENST00000482709' => array(
'start' => '90916791',
'end' => '90918391',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-009'
),
'ENST00000495966' => array(
'start' => '91020448',
'end' => '91022055',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-005'
),
'ENST00000498303' => array(
'start' => '90940949',
'end' => '91022081',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF644-004'
),
'ENST00000621077' => array(
'start' => '90937883',
'end' => '90940120',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF644-202'
),
'ENST00000370445' => array(
'start' => '90711539',
'end' => '90717237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'BARHL2-001'
),
'ENST00000362796' => array(
'start' => '90657750',
'end' => '90657964',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.1-202'
),
'ENST00000425185' => array(
'start' => '90851759',
'end' => '90854286',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.2-001'
),
'ENST00000435832' => array(
'start' => '90510910',
'end' => '90533472',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-827O9.1-001'
),
'ENST00000420457' => array(
'start' => '90892992',
'end' => '90893612',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PHKA1P1-001'
),
'ENST00000435649' => array(
'start' => '90782986',
'end' => '90851515',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.1-004'
),
'ENST00000443802' => array(
'start' => '90831869',
'end' => '90851650',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.1-003'
),
'ENST00000455680' => array(
'start' => '90829547',
'end' => '90836161',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP4-665J23.1-001'
),
'ENST00000606660' => array(
'start' => '90829547',
'end' => '90851618',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP4-665J23.1-002'
),
'ENST00000606898' => array(
'start' => '90860550',
'end' => '90862920',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-665J23.4-001'
),
'ENSMUST00000086795' => array(
'start' => '106452523',
'end' => '106458166',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Barhl2-001'
),
'ENSMUST00000045466' => array(
'start' => '106616741',
'end' => '106695975',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-002'
),
'ENSMUST00000112694' => array(
'start' => '106617073',
'end' => '106624390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-019'
),
'ENSMUST00000112695' => array(
'start' => '106616744',
'end' => '106696597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-006'
),
'ENSMUST00000112696' => array(
'start' => '106616739',
'end' => '106696830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-001'
),
'ENSMUST00000112698' => array(
'start' => '106616742',
'end' => '106696830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-201'
),
'ENSMUST00000122980' => array(
'start' => '106638069',
'end' => '106667617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-018'
),
'ENSMUST00000124263' => array(
'start' => '106638284',
'end' => '106696564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-014'
),
'ENSMUST00000125895' => array(
'start' => '106617970',
'end' => '106696805',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-007'
),
'ENSMUST00000127434' => array(
'start' => '106636807',
'end' => '106696826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-003'
),
'ENSMUST00000127572' => array(
'start' => '106690591',
'end' => '106696546',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-015'
),
'ENSMUST00000127932' => array(
'start' => '106695055',
'end' => '106697287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp644-009'
),
'ENSMUST00000135108' => array(
'start' => '106638427',
'end' => '106696650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-008'
),
'ENSMUST00000137285' => array(
'start' => '106637818',
'end' => '106696564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-004'
),
'ENSMUST00000142391' => array(
'start' => '106689820',
'end' => '106696166',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zfp644-005'
),
'ENSMUST00000148192' => array(
'start' => '106690604',
'end' => '106696544',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-016'
),
'ENSMUST00000155495' => array(
'start' => '106638237',
'end' => '106696650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp644-010'
),
'ENSMUST00000156851' => array(
'start' => '106695360',
'end' => '106696012',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zfp644-017'
),
'ENSMUST00000167618' => array(
'start' => '106609098',
'end' => '106609201',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm17304-201'
),
'ENSMUST00000180111' => array(
'start' => '106072327',
'end' => '106072433',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25672-201'
),
'ENSMUST00000180862' => array(
'start' => '106465800',
'end' => '106471007',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26872-001'
),
'ENSMUST00000149128' => array(
'start' => '106557946',
'end' => '106696571',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm28039-001'
),
'ENSMUST00000124394' => array(
'start' => '106557739',
'end' => '106574718',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm28050-002'
),
'ENSMUST00000131029' => array(
'start' => '106500894',
'end' => '106574715',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm28050-001'
),
'ENSMUST00000187692' => array(
'start' => '106574875',
'end' => '106575387',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421H18.4-001'
),
'ENSDART00000074082' => array(
'start' => '20874033',
'end' => '20910437',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'znf644b-001'
),
'ENSDART00000102661' => array(
'start' => '21030149',
'end' => '21033978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'barhl2-001'
),
'ENSDART00000139511' => array(
'start' => '21032233',
'end' => '21033832',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'barhl2-002'
),
'ENSDART00000119410' => array(
'start' => '20998124',
'end' => '20998240',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.467-201'
),
'ENSDART00000151146' => array(
'start' => '20955168',
'end' => '21027595',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-001'
),
'ENSDART00000151413' => array(
'start' => '20992332',
'end' => '21027648',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-002'
),
'ENSDART00000151820' => array(
'start' => '21007118',
'end' => '21027590',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-15l16.3-003'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KP_0002' => array(
'genes_in_region' => array(
'ENSG00000122482' => array(
[maximum depth reached]
),
'ENSG00000143032' => array(
[maximum depth reached]
),
'ENSG00000199666' => array(
[maximum depth reached]
),
'ENSG00000225446' => array(
[maximum depth reached]
),
'ENSG00000229201' => array(
[maximum depth reached]
),
'ENSG00000232882' => array(
[maximum depth reached]
),
'ENSG00000233593' => array(
[maximum depth reached]
),
'ENSG00000272094' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Breast',
(int) 15 => 'Placenta',
(int) 16 => 'Ovary',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Heart',
(int) 29 => 'Testis',
(int) 30 => 'Brain',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Testis',
(int) 34 => 'Adrenal',
(int) 35 => 'Brain',
(int) 36 => 'Testis',
(int) 37 => 'Testis',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Adipose',
(int) 55 => 'Colon',
(int) 56 => 'Kidney',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Lung',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Breast',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Kidney',
(int) 73 => 'Liver',
(int) 74 => 'Lung',
(int) 75 => 'Muscle',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Adipose',
(int) 79 => 'Adrenal',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis'
)
),
'CIL_0007KP_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000034384' => array(
[maximum depth reached]
),
'ENSMUSG00000049606' => array(
[maximum depth reached]
),
'ENSMUSG00000097018' => array(
[maximum depth reached]
),
'ENSMUSG00000101237' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Testis',
(int) 23 => 'Brain',
(int) 24 => 'Muscle',
(int) 25 => 'Adipose',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Adipose',
(int) 38 => 'Bladder',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Lung',
(int) 44 => 'Muscle',
(int) 45 => 'Ovary',
(int) 46 => 'Placenta',
(int) 47 => 'Adrenal',
(int) 48 => 'Breast',
(int) 49 => 'Adrenal',
(int) 50 => 'Liver',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adrenal',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Ovary',
(int) 61 => 'Adrenal',
(int) 62 => 'Adrenal',
(int) 63 => 'Breast',
(int) 64 => 'Ovary',
(int) 65 => 'Adrenal',
(int) 66 => 'Brain',
(int) 67 => 'Liver',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Breast',
(int) 71 => 'Liver',
(int) 72 => 'Placenta',
(int) 73 => 'Testis'
)
),
'CIL_0007KP_0004' => array(
'genes_in_region' => array(
'ENSDARG00000052254' => array(
[maximum depth reached]
),
'ENSDARG00000070129' => array(
[maximum depth reached]
),
'ENSDARG00000084010' => array(
[maximum depth reached]
),
'ENSDARG00000096341' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Brain',
(int) 16 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KP_0001',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '90087232',
'seq_end' => '90373796',
'region_length' => '286564',
'region_type' => 'UCNEbase',
'el_id' => 'BARHL2'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(ZNF644)