C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BarH-like homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370445 BARHL2-001 ENSG00000143032 9606 - 1:90711539-90717237 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaTestisENST00000370445
Transcript ID Brain Placenta Testis
ENST00000370445 0.011±0.00 0.055±0.00 2.932±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069A CIL_00069A_0001 CGP 1:89995112-90717237
CIL_0007KP CIL_0007KP_0002 UCNEbase 1:90373797-90945738
CIL_000906 CIL_000906_0001 VISTA 1:90540005-91141658

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001709 IEA cell fate determination
GO:0001764 IEA neuron migration
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0030182 IEA neuron differentiation
GO:0030516 IEA regulation of axon extension
GO:0043565 IEA sequence-specific DNA binding
GO:0045165 IEA cell fate commitment
GO:0045727 IEA positive regulation of translation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086795 Barhl2-001 protein_coding Mus_musculus 0 1493
ENSDART00000102661 barhl2-001 protein_coding Danio_rerio 0 344
ENSDART00000139511 barhl2-002 retained_intron Danio_rerio 0 270
ENSMUST00000174027 Barhl1-005 processed_transcript Mus_musculus 0 265
ENSMUST00000113847 Barhl1-002 protein_coding Mus_musculus 0 259
ENSMUST00000113849 Barhl1-003 protein_coding Mus_musculus 0 259
ENSMUST00000124059 Barhl1-004 processed_transcript Mus_musculus 0 259
ENSMUST00000050776 Barhl1-001 protein_coding Mus_musculus 0 259

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