C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BarH-like 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086795 Barhl2-001 ENSMUSG00000034384 10090 - 5:106452523-106458166 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000086795
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000086795 0.012±0.00 0.003±0.00 5.191±4.10 0.013±0.00 0.023±0.01 0.011±0.00 0.012±0.00 0.018±0.02 0.011±0.00 0.037±0.02 0.011±0.01 0.129±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069A CIL_00069A_0002 CGP 5:105876565-106458166
CIL_0007KP CIL_0007KP_0003 UCNEbase 5:105961016-106642307
CIL_000906 CIL_000906_0002 VISTA 5:106264330-106866018

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001709 IMP cell fate determination
GO:0001764 IMP neuron migration
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0030182 IMP neuron differentiation
GO:0030516 IMP regulation of axon extension
GO:0043565 IEA sequence-specific DNA binding
GO:0045165 IDA cell fate commitment
GO:0045727 IMP positive regulation of translation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370445 BARHL2-001 protein_coding Homo_sapiens 0 1493

Loading