| Source ID |
Type |
Tax ID |
Position |
| PRDM8 |
UCNEbase |
7955 |
5:40780537-40991359  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007LC_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LC_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000156269' => 'N(alpha)-acetyltransferase 11, NatA catalytic subunit',
'ENSG00000163297' => 'anthrax toxin receptor 2',
'ENSG00000196475' => 'glycerol kinase 2',
'ENSG00000212620' => 'Small nucleolar RNA SNORA75',
'ENSG00000248408' => null,
'ENSG00000249307' => 'long intergenic non-protein coding RNA 1088',
'ENSG00000249646' => 'olfactory receptor, family 7, subfamily E, member 94 pseudogene',
'ENSG00000250334' => 'long intergenic non-protein coding RNA 989',
'ENSG00000251321' => 'prostate cancer associated transcript 4 (non-protein coding)',
'ENSG00000251399' => null,
'ENSMUSG00000029338' => 'anthrax toxin receptor 2',
'ENSMUSG00000046000' => 'N(alpha)-acetyltransferase 11, NatA catalytic subunit',
'ENSMUSG00000050553' => 'glycerol kinase 2',
'ENSMUSG00000067161' => 'predicted pseudogene 5560',
'ENSMUSG00000097516' => 'RIKEN cDNA 4930467D21 gene',
'ENSDARG00000084421' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000156269' => 'NAA11',
'ENSG00000163297' => 'ANTXR2',
'ENSG00000196475' => 'GK2',
'ENSG00000212620' => 'SNORA75',
'ENSG00000248408' => 'RP11-452C8.1',
'ENSG00000249307' => 'LINC01088',
'ENSG00000249646' => 'OR7E94P',
'ENSG00000250334' => 'LINC00989',
'ENSG00000251321' => 'PCAT4',
'ENSG00000251399' => 'RP11-234K19.1',
'ENSMUSG00000029338' => 'Antxr2',
'ENSMUSG00000046000' => 'Naa11',
'ENSMUSG00000050553' => 'Gk2',
'ENSMUSG00000067161' => 'Gm5560',
'ENSMUSG00000097516' => '4930467D21Rik',
'ENSDARG00000084421' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 29 => 'Bladder',
(int) 39 => 'Brain',
(int) 57 => 'Breast',
(int) 72 => 'Colon',
(int) 92 => 'Heart',
(int) 112 => 'Kidney',
(int) 129 => 'Liver',
(int) 142 => 'Lung',
(int) 161 => 'Muscle',
(int) 171 => 'Ovary',
(int) 188 => 'Placenta',
(int) 210 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 40,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000286794' => array(
'start' => '79316653',
'end' => '79326050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NAA11-001'
),
'ENST00000511542' => array(
'start' => '79225694',
'end' => '79325523',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NAA11-002'
),
'ENST00000513733' => array(
'start' => '79225980',
'end' => '79325468',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NAA11-003'
),
'ENST00000307333' => array(
'start' => '79977579',
'end' => '80072563',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-001'
),
'ENST00000346652' => array(
'start' => '79977537',
'end' => '80072700',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-002'
),
'ENST00000403729' => array(
'start' => '79901149',
'end' => '80073086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-004'
),
'ENST00000404191' => array(
'start' => '79907353',
'end' => '80073472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-003'
),
'ENST00000449651' => array(
'start' => '79905571',
'end' => '80071620',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ANTXR2-005'
),
'ENST00000482406' => array(
'start' => '79906762',
'end' => '79964890',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-007'
),
'ENST00000491345' => array(
'start' => '79907170',
'end' => '79965097',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-006'
),
'ENST00000506286' => array(
'start' => '80069436',
'end' => '80125454',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-008'
),
'ENST00000514959' => array(
'start' => '80054281',
'end' => '80079600',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-009'
),
'ENST00000358842' => array(
'start' => '79406352',
'end' => '79408293',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GK2-001'
),
'ENST00000391318' => array(
'start' => '79843102',
'end' => '79843228',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA75.1-207'
),
'ENST00000506460' => array(
'start' => '79663761',
'end' => '79696837',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-452C8.1-001'
),
'ENST00000437737' => array(
'start' => '79211681',
'end' => '79245532',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-010'
),
'ENST00000505149' => array(
'start' => '79305123',
'end' => '79308798',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-006'
),
'ENST00000507476' => array(
'start' => '79195837',
'end' => '79308755',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-005'
),
'ENST00000507761' => array(
'start' => '79195836',
'end' => '79227956',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-008'
),
'ENST00000509088' => array(
'start' => '78971748',
'end' => '79308544',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-001'
),
'ENST00000510667' => array(
'start' => '78971748',
'end' => '79308472',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-004'
),
'ENST00000511241' => array(
'start' => '79258781',
'end' => '79308654',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-007'
),
'ENST00000511895' => array(
'start' => '79211685',
'end' => '79227886',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-009'
),
'ENST00000512130' => array(
'start' => '79197541',
'end' => '79308655',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-003'
),
'ENST00000513153' => array(
'start' => '79085239',
'end' => '79308653',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-002'
),
'ENST00000515597' => array(
'start' => '79195834',
'end' => '79299565',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-011'
),
'ENST00000502331' => array(
'start' => '79587757',
'end' => '79588130',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'OR7E94P-001'
),
'ENST00000601375' => array(
'start' => '79587302',
'end' => '79588091',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OR7E94P-002'
),
'ENST00000508174' => array(
'start' => '79492416',
'end' => '79576460',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00989-001'
),
'ENST00000515544' => array(
'start' => '79492593',
'end' => '79576458',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00989-002'
),
'ENST00000504263' => array(
'start' => '79827471',
'end' => '79863247',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'PCAT4-001'
),
'ENST00000514836' => array(
'start' => '79827535',
'end' => '79877770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'PCAT4-002'
),
'ENST00000513155' => array(
'start' => '79596542',
'end' => '79597173',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-234K19.1-001'
),
'ENSMUST00000031281' => array(
'start' => '97882783',
'end' => '98030733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Antxr2-201'
),
'ENSMUST00000060265' => array(
'start' => '97382224',
'end' => '97392330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Naa11-201'
),
'ENSMUST00000059657' => array(
'start' => '97455161',
'end' => '97457008',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gk2-201'
),
'ENSMUST00000086918' => array(
'start' => '97264828',
'end' => '97265719',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5560-001'
),
'ENSMUST00000180634' => array(
'start' => '97392447',
'end' => '97588125',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930467D21Rik-201'
),
'ENSMUST00000181724' => array(
'start' => '97392440',
'end' => '97586878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930467D21Rik-202'
),
'ENSDART00000119821' => array(
'start' => '40925225',
'end' => '40925341',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.662-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LC_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LC_0001' => array(
'genes_in_region' => array(
'ENSG00000156269' => array(
[maximum depth reached]
),
'ENSG00000163297' => array(
[maximum depth reached]
),
'ENSG00000196475' => array(
[maximum depth reached]
),
'ENSG00000248408' => array(
[maximum depth reached]
),
'ENSG00000249307' => array(
[maximum depth reached]
),
'ENSG00000249646' => array(
[maximum depth reached]
),
'ENSG00000250334' => array(
[maximum depth reached]
),
'ENSG00000251321' => array(
[maximum depth reached]
),
'ENSG00000251399' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Heart',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Lung',
(int) 8 => 'Placenta',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Ovary',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Breast',
(int) 28 => 'Lung',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Brain',
(int) 60 => 'Kidney',
(int) 61 => 'Testis',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Adipose',
(int) 76 => 'Adrenal',
(int) 77 => 'Breast',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Ovary',
(int) 82 => 'Testis',
(int) 83 => 'Brain',
(int) 84 => 'Colon',
(int) 85 => 'Lung',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Breast',
(int) 89 => 'Placenta',
(int) 90 => 'Adipose',
(int) 91 => 'Bladder',
(int) 92 => 'Breast',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Lung',
(int) 96 => 'Testis',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Brain',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Lung',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Heart',
(int) 110 => 'Kidney',
(int) 111 => 'Liver',
(int) 112 => 'Lung',
(int) 113 => 'Muscle',
(int) 114 => 'Ovary',
(int) 115 => 'Placenta',
(int) 116 => 'Adrenal',
(int) 117 => 'Brain',
(int) 118 => 'Colon',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Testis',
(int) 123 => 'Muscle',
(int) 124 => 'Placenta',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Brain',
(int) 133 => 'Colon',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Adipose',
(int) 137 => 'Adrenal',
(int) 138 => 'Bladder',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Lung',
(int) 146 => 'Muscle',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Adipose',
(int) 151 => 'Adrenal',
(int) 152 => 'Bladder',
(int) 153 => 'Colon',
(int) 154 => 'Heart',
(int) 155 => 'Lung',
(int) 156 => 'Ovary',
(int) 157 => 'Placenta',
(int) 158 => 'Testis',
(int) 159 => 'Adipose',
(int) 160 => 'Adrenal',
(int) 161 => 'Bladder',
(int) 162 => 'Brain',
(int) 163 => 'Breast',
(int) 164 => 'Colon',
(int) 165 => 'Heart',
(int) 166 => 'Kidney',
(int) 167 => 'Liver',
(int) 168 => 'Lung',
(int) 169 => 'Muscle',
(int) 170 => 'Ovary',
(int) 171 => 'Placenta',
(int) 172 => 'Testis',
(int) 173 => 'Heart',
(int) 174 => 'Lung',
(int) 175 => 'Testis',
(int) 176 => 'Adipose',
(int) 177 => 'Adrenal',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Ovary',
(int) 182 => 'Testis'
)
),
'CIL_0007LC_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000029338' => array(
[maximum depth reached]
),
'ENSMUSG00000046000' => array(
[maximum depth reached]
),
'ENSMUSG00000050553' => array(
[maximum depth reached]
),
'ENSMUSG00000067161' => array(
[maximum depth reached]
),
'ENSMUSG00000097516' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adipose',
(int) 32 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Brain',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Liver',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000156269' => 'N(alpha)-acetyltransferase 11, NatA catalytic subunit',
'ENSG00000163297' => 'anthrax toxin receptor 2',
'ENSG00000196475' => 'glycerol kinase 2',
'ENSG00000212620' => 'Small nucleolar RNA SNORA75',
'ENSG00000248408' => null,
'ENSG00000249307' => 'long intergenic non-protein coding RNA 1088',
'ENSG00000249646' => 'olfactory receptor, family 7, subfamily E, member 94 pseudogene',
'ENSG00000250334' => 'long intergenic non-protein coding RNA 989',
'ENSG00000251321' => 'prostate cancer associated transcript 4 (non-protein coding)',
'ENSG00000251399' => null,
'ENSMUSG00000029338' => 'anthrax toxin receptor 2',
'ENSMUSG00000046000' => 'N(alpha)-acetyltransferase 11, NatA catalytic subunit',
'ENSMUSG00000050553' => 'glycerol kinase 2',
'ENSMUSG00000067161' => 'predicted pseudogene 5560',
'ENSMUSG00000097516' => 'RIKEN cDNA 4930467D21 gene',
'ENSDARG00000084421' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000156269' => 'NAA11',
'ENSG00000163297' => 'ANTXR2',
'ENSG00000196475' => 'GK2',
'ENSG00000212620' => 'SNORA75',
'ENSG00000248408' => 'RP11-452C8.1',
'ENSG00000249307' => 'LINC01088',
'ENSG00000249646' => 'OR7E94P',
'ENSG00000250334' => 'LINC00989',
'ENSG00000251321' => 'PCAT4',
'ENSG00000251399' => 'RP11-234K19.1',
'ENSMUSG00000029338' => 'Antxr2',
'ENSMUSG00000046000' => 'Naa11',
'ENSMUSG00000050553' => 'Gk2',
'ENSMUSG00000067161' => 'Gm5560',
'ENSMUSG00000097516' => '4930467D21Rik',
'ENSDARG00000084421' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LC_0001',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '78987504',
'seq_end' => '79906161',
'region_length' => '918657',
'region_type' => 'UCNEbase',
'el_id' => 'PRDM8'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LC_0002',
'tax_id' => '10090',
'chromosome' => '5',
'seq_start' => '97148425',
'seq_end' => '97885285',
'region_length' => '736860',
'region_type' => 'UCNEbase',
'el_id' => 'PRDM8'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LC_0003',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '40780537',
'seq_end' => '40991359',
'region_length' => '210822',
'region_type' => 'UCNEbase',
'el_id' => 'PRDM8'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 29 => 'Bladder',
(int) 39 => 'Brain',
(int) 57 => 'Breast',
(int) 72 => 'Colon',
(int) 92 => 'Heart',
(int) 112 => 'Kidney',
(int) 129 => 'Liver',
(int) 142 => 'Lung',
(int) 161 => 'Muscle',
(int) 171 => 'Ovary',
(int) 188 => 'Placenta',
(int) 210 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 40
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000286794' => array(
'start' => '79316653',
'end' => '79326050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NAA11-001'
),
'ENST00000511542' => array(
'start' => '79225694',
'end' => '79325523',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NAA11-002'
),
'ENST00000513733' => array(
'start' => '79225980',
'end' => '79325468',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NAA11-003'
),
'ENST00000307333' => array(
'start' => '79977579',
'end' => '80072563',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-001'
),
'ENST00000346652' => array(
'start' => '79977537',
'end' => '80072700',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-002'
),
'ENST00000403729' => array(
'start' => '79901149',
'end' => '80073086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-004'
),
'ENST00000404191' => array(
'start' => '79907353',
'end' => '80073472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-003'
),
'ENST00000449651' => array(
'start' => '79905571',
'end' => '80071620',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ANTXR2-005'
),
'ENST00000482406' => array(
'start' => '79906762',
'end' => '79964890',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-007'
),
'ENST00000491345' => array(
'start' => '79907170',
'end' => '79965097',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-006'
),
'ENST00000506286' => array(
'start' => '80069436',
'end' => '80125454',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-008'
),
'ENST00000514959' => array(
'start' => '80054281',
'end' => '80079600',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-009'
),
'ENST00000358842' => array(
'start' => '79406352',
'end' => '79408293',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GK2-001'
),
'ENST00000391318' => array(
'start' => '79843102',
'end' => '79843228',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA75.1-207'
),
'ENST00000506460' => array(
'start' => '79663761',
'end' => '79696837',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-452C8.1-001'
),
'ENST00000437737' => array(
'start' => '79211681',
'end' => '79245532',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-010'
),
'ENST00000505149' => array(
'start' => '79305123',
'end' => '79308798',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-006'
),
'ENST00000507476' => array(
'start' => '79195837',
'end' => '79308755',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-005'
),
'ENST00000507761' => array(
'start' => '79195836',
'end' => '79227956',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-008'
),
'ENST00000509088' => array(
'start' => '78971748',
'end' => '79308544',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-001'
),
'ENST00000510667' => array(
'start' => '78971748',
'end' => '79308472',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-004'
),
'ENST00000511241' => array(
'start' => '79258781',
'end' => '79308654',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-007'
),
'ENST00000511895' => array(
'start' => '79211685',
'end' => '79227886',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-009'
),
'ENST00000512130' => array(
'start' => '79197541',
'end' => '79308655',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-003'
),
'ENST00000513153' => array(
'start' => '79085239',
'end' => '79308653',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-002'
),
'ENST00000515597' => array(
'start' => '79195834',
'end' => '79299565',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-011'
),
'ENST00000502331' => array(
'start' => '79587757',
'end' => '79588130',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'OR7E94P-001'
),
'ENST00000601375' => array(
'start' => '79587302',
'end' => '79588091',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OR7E94P-002'
),
'ENST00000508174' => array(
'start' => '79492416',
'end' => '79576460',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00989-001'
),
'ENST00000515544' => array(
'start' => '79492593',
'end' => '79576458',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00989-002'
),
'ENST00000504263' => array(
'start' => '79827471',
'end' => '79863247',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'PCAT4-001'
),
'ENST00000514836' => array(
'start' => '79827535',
'end' => '79877770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'PCAT4-002'
),
'ENST00000513155' => array(
'start' => '79596542',
'end' => '79597173',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-234K19.1-001'
),
'ENSMUST00000031281' => array(
'start' => '97882783',
'end' => '98030733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Antxr2-201'
),
'ENSMUST00000060265' => array(
'start' => '97382224',
'end' => '97392330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Naa11-201'
),
'ENSMUST00000059657' => array(
'start' => '97455161',
'end' => '97457008',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gk2-201'
),
'ENSMUST00000086918' => array(
'start' => '97264828',
'end' => '97265719',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5560-001'
),
'ENSMUST00000180634' => array(
'start' => '97392447',
'end' => '97588125',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930467D21Rik-201'
),
'ENSMUST00000181724' => array(
'start' => '97392440',
'end' => '97586878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930467D21Rik-202'
),
'ENSDART00000119821' => array(
'start' => '40925225',
'end' => '40925341',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.662-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LC_0001' => array(
'genes_in_region' => array(
'ENSG00000156269' => array(
[maximum depth reached]
),
'ENSG00000163297' => array(
[maximum depth reached]
),
'ENSG00000196475' => array(
[maximum depth reached]
),
'ENSG00000248408' => array(
[maximum depth reached]
),
'ENSG00000249307' => array(
[maximum depth reached]
),
'ENSG00000249646' => array(
[maximum depth reached]
),
'ENSG00000250334' => array(
[maximum depth reached]
),
'ENSG00000251321' => array(
[maximum depth reached]
),
'ENSG00000251399' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Heart',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Lung',
(int) 8 => 'Placenta',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Ovary',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Breast',
(int) 28 => 'Lung',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Brain',
(int) 60 => 'Kidney',
(int) 61 => 'Testis',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Adipose',
(int) 76 => 'Adrenal',
(int) 77 => 'Breast',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Ovary',
(int) 82 => 'Testis',
(int) 83 => 'Brain',
(int) 84 => 'Colon',
(int) 85 => 'Lung',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Breast',
(int) 89 => 'Placenta',
(int) 90 => 'Adipose',
(int) 91 => 'Bladder',
(int) 92 => 'Breast',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Lung',
(int) 96 => 'Testis',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Brain',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Lung',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Heart',
(int) 110 => 'Kidney',
(int) 111 => 'Liver',
(int) 112 => 'Lung',
(int) 113 => 'Muscle',
(int) 114 => 'Ovary',
(int) 115 => 'Placenta',
(int) 116 => 'Adrenal',
(int) 117 => 'Brain',
(int) 118 => 'Colon',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Testis',
(int) 123 => 'Muscle',
(int) 124 => 'Placenta',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Brain',
(int) 133 => 'Colon',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Adipose',
(int) 137 => 'Adrenal',
(int) 138 => 'Bladder',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Lung',
(int) 146 => 'Muscle',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Adipose',
(int) 151 => 'Adrenal',
(int) 152 => 'Bladder',
(int) 153 => 'Colon',
(int) 154 => 'Heart',
(int) 155 => 'Lung',
(int) 156 => 'Ovary',
(int) 157 => 'Placenta',
(int) 158 => 'Testis',
(int) 159 => 'Adipose',
(int) 160 => 'Adrenal',
(int) 161 => 'Bladder',
(int) 162 => 'Brain',
(int) 163 => 'Breast',
(int) 164 => 'Colon',
(int) 165 => 'Heart',
(int) 166 => 'Kidney',
(int) 167 => 'Liver',
(int) 168 => 'Lung',
(int) 169 => 'Muscle',
(int) 170 => 'Ovary',
(int) 171 => 'Placenta',
(int) 172 => 'Testis',
(int) 173 => 'Heart',
(int) 174 => 'Lung',
(int) 175 => 'Testis',
(int) 176 => 'Adipose',
(int) 177 => 'Adrenal',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Ovary',
(int) 182 => 'Testis'
)
),
'CIL_0007LC_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000029338' => array(
[maximum depth reached]
),
'ENSMUSG00000046000' => array(
[maximum depth reached]
),
'ENSMUSG00000050553' => array(
[maximum depth reached]
),
'ENSMUSG00000067161' => array(
[maximum depth reached]
),
'ENSMUSG00000097516' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adipose',
(int) 32 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Brain',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Liver',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LC_0003',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '40780537',
'seq_end' => '40991359',
'region_length' => '210822',
'region_type' => 'UCNEbase',
'el_id' => 'PRDM8'
)
)
$gene_el = array(
'ENSMUST00000180634' => array(
'Brain' => array(
'average_FPKM' => '0.016',
'stddev_FPKM' => '0.01'
),
'Placenta' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.309',
'stddev_FPKM' => '0.09'
)
),
'ENSMUST00000181724' => array(
'Liver' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.027',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.014',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.821',
'stddev_FPKM' => '0.34'
)
)
)
$gene_key = 'ENSMUSG00000097516'
$is_first = false
$tran_el = array(
'Liver' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.027',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.014',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.821',
'stddev_FPKM' => '0.34'
)
)
$tran_key = 'ENSMUST00000181724'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LC_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000156269' => 'N(alpha)-acetyltransferase 11, NatA catalytic subunit',
'ENSG00000163297' => 'anthrax toxin receptor 2',
'ENSG00000196475' => 'glycerol kinase 2',
'ENSG00000212620' => 'Small nucleolar RNA SNORA75',
'ENSG00000248408' => null,
'ENSG00000249307' => 'long intergenic non-protein coding RNA 1088',
'ENSG00000249646' => 'olfactory receptor, family 7, subfamily E, member 94 pseudogene',
'ENSG00000250334' => 'long intergenic non-protein coding RNA 989',
'ENSG00000251321' => 'prostate cancer associated transcript 4 (non-protein coding)',
'ENSG00000251399' => null,
'ENSMUSG00000029338' => 'anthrax toxin receptor 2',
'ENSMUSG00000046000' => 'N(alpha)-acetyltransferase 11, NatA catalytic subunit',
'ENSMUSG00000050553' => 'glycerol kinase 2',
'ENSMUSG00000067161' => 'predicted pseudogene 5560',
'ENSMUSG00000097516' => 'RIKEN cDNA 4930467D21 gene',
'ENSDARG00000084421' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000156269' => 'NAA11',
'ENSG00000163297' => 'ANTXR2',
'ENSG00000196475' => 'GK2',
'ENSG00000212620' => 'SNORA75',
'ENSG00000248408' => 'RP11-452C8.1',
'ENSG00000249307' => 'LINC01088',
'ENSG00000249646' => 'OR7E94P',
'ENSG00000250334' => 'LINC00989',
'ENSG00000251321' => 'PCAT4',
'ENSG00000251399' => 'RP11-234K19.1',
'ENSMUSG00000029338' => 'Antxr2',
'ENSMUSG00000046000' => 'Naa11',
'ENSMUSG00000050553' => 'Gk2',
'ENSMUSG00000067161' => 'Gm5560',
'ENSMUSG00000097516' => '4930467D21Rik',
'ENSDARG00000084421' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 29 => 'Bladder',
(int) 39 => 'Brain',
(int) 57 => 'Breast',
(int) 72 => 'Colon',
(int) 92 => 'Heart',
(int) 112 => 'Kidney',
(int) 129 => 'Liver',
(int) 142 => 'Lung',
(int) 161 => 'Muscle',
(int) 171 => 'Ovary',
(int) 188 => 'Placenta',
(int) 210 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 40,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000286794' => array(
'start' => '79316653',
'end' => '79326050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NAA11-001'
),
'ENST00000511542' => array(
'start' => '79225694',
'end' => '79325523',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NAA11-002'
),
'ENST00000513733' => array(
'start' => '79225980',
'end' => '79325468',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NAA11-003'
),
'ENST00000307333' => array(
'start' => '79977579',
'end' => '80072563',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-001'
),
'ENST00000346652' => array(
'start' => '79977537',
'end' => '80072700',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-002'
),
'ENST00000403729' => array(
'start' => '79901149',
'end' => '80073086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-004'
),
'ENST00000404191' => array(
'start' => '79907353',
'end' => '80073472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-003'
),
'ENST00000449651' => array(
'start' => '79905571',
'end' => '80071620',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ANTXR2-005'
),
'ENST00000482406' => array(
'start' => '79906762',
'end' => '79964890',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-007'
),
'ENST00000491345' => array(
'start' => '79907170',
'end' => '79965097',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-006'
),
'ENST00000506286' => array(
'start' => '80069436',
'end' => '80125454',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-008'
),
'ENST00000514959' => array(
'start' => '80054281',
'end' => '80079600',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-009'
),
'ENST00000358842' => array(
'start' => '79406352',
'end' => '79408293',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GK2-001'
),
'ENST00000391318' => array(
'start' => '79843102',
'end' => '79843228',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA75.1-207'
),
'ENST00000506460' => array(
'start' => '79663761',
'end' => '79696837',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-452C8.1-001'
),
'ENST00000437737' => array(
'start' => '79211681',
'end' => '79245532',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-010'
),
'ENST00000505149' => array(
'start' => '79305123',
'end' => '79308798',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-006'
),
'ENST00000507476' => array(
'start' => '79195837',
'end' => '79308755',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-005'
),
'ENST00000507761' => array(
'start' => '79195836',
'end' => '79227956',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-008'
),
'ENST00000509088' => array(
'start' => '78971748',
'end' => '79308544',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-001'
),
'ENST00000510667' => array(
'start' => '78971748',
'end' => '79308472',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-004'
),
'ENST00000511241' => array(
'start' => '79258781',
'end' => '79308654',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-007'
),
'ENST00000511895' => array(
'start' => '79211685',
'end' => '79227886',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-009'
),
'ENST00000512130' => array(
'start' => '79197541',
'end' => '79308655',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-003'
),
'ENST00000513153' => array(
'start' => '79085239',
'end' => '79308653',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-002'
),
'ENST00000515597' => array(
'start' => '79195834',
'end' => '79299565',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-011'
),
'ENST00000502331' => array(
'start' => '79587757',
'end' => '79588130',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'OR7E94P-001'
),
'ENST00000601375' => array(
'start' => '79587302',
'end' => '79588091',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OR7E94P-002'
),
'ENST00000508174' => array(
'start' => '79492416',
'end' => '79576460',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00989-001'
),
'ENST00000515544' => array(
'start' => '79492593',
'end' => '79576458',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00989-002'
),
'ENST00000504263' => array(
'start' => '79827471',
'end' => '79863247',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'PCAT4-001'
),
'ENST00000514836' => array(
'start' => '79827535',
'end' => '79877770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'PCAT4-002'
),
'ENST00000513155' => array(
'start' => '79596542',
'end' => '79597173',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-234K19.1-001'
),
'ENSMUST00000031281' => array(
'start' => '97882783',
'end' => '98030733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Antxr2-201'
),
'ENSMUST00000060265' => array(
'start' => '97382224',
'end' => '97392330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Naa11-201'
),
'ENSMUST00000059657' => array(
'start' => '97455161',
'end' => '97457008',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gk2-201'
),
'ENSMUST00000086918' => array(
'start' => '97264828',
'end' => '97265719',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5560-001'
),
'ENSMUST00000180634' => array(
'start' => '97392447',
'end' => '97588125',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930467D21Rik-201'
),
'ENSMUST00000181724' => array(
'start' => '97392440',
'end' => '97586878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930467D21Rik-202'
),
'ENSDART00000119821' => array(
'start' => '40925225',
'end' => '40925341',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.662-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LC_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LC_0001' => array(
'genes_in_region' => array(
'ENSG00000156269' => array(
[maximum depth reached]
),
'ENSG00000163297' => array(
[maximum depth reached]
),
'ENSG00000196475' => array(
[maximum depth reached]
),
'ENSG00000248408' => array(
[maximum depth reached]
),
'ENSG00000249307' => array(
[maximum depth reached]
),
'ENSG00000249646' => array(
[maximum depth reached]
),
'ENSG00000250334' => array(
[maximum depth reached]
),
'ENSG00000251321' => array(
[maximum depth reached]
),
'ENSG00000251399' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Heart',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Lung',
(int) 8 => 'Placenta',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Ovary',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Breast',
(int) 28 => 'Lung',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Brain',
(int) 60 => 'Kidney',
(int) 61 => 'Testis',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Adipose',
(int) 76 => 'Adrenal',
(int) 77 => 'Breast',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Ovary',
(int) 82 => 'Testis',
(int) 83 => 'Brain',
(int) 84 => 'Colon',
(int) 85 => 'Lung',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Breast',
(int) 89 => 'Placenta',
(int) 90 => 'Adipose',
(int) 91 => 'Bladder',
(int) 92 => 'Breast',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Lung',
(int) 96 => 'Testis',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Brain',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Lung',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Heart',
(int) 110 => 'Kidney',
(int) 111 => 'Liver',
(int) 112 => 'Lung',
(int) 113 => 'Muscle',
(int) 114 => 'Ovary',
(int) 115 => 'Placenta',
(int) 116 => 'Adrenal',
(int) 117 => 'Brain',
(int) 118 => 'Colon',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Testis',
(int) 123 => 'Muscle',
(int) 124 => 'Placenta',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Brain',
(int) 133 => 'Colon',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Adipose',
(int) 137 => 'Adrenal',
(int) 138 => 'Bladder',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Lung',
(int) 146 => 'Muscle',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Adipose',
(int) 151 => 'Adrenal',
(int) 152 => 'Bladder',
(int) 153 => 'Colon',
(int) 154 => 'Heart',
(int) 155 => 'Lung',
(int) 156 => 'Ovary',
(int) 157 => 'Placenta',
(int) 158 => 'Testis',
(int) 159 => 'Adipose',
(int) 160 => 'Adrenal',
(int) 161 => 'Bladder',
(int) 162 => 'Brain',
(int) 163 => 'Breast',
(int) 164 => 'Colon',
(int) 165 => 'Heart',
(int) 166 => 'Kidney',
(int) 167 => 'Liver',
(int) 168 => 'Lung',
(int) 169 => 'Muscle',
(int) 170 => 'Ovary',
(int) 171 => 'Placenta',
(int) 172 => 'Testis',
(int) 173 => 'Heart',
(int) 174 => 'Lung',
(int) 175 => 'Testis',
(int) 176 => 'Adipose',
(int) 177 => 'Adrenal',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Ovary',
(int) 182 => 'Testis'
)
),
'CIL_0007LC_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000029338' => array(
[maximum depth reached]
),
'ENSMUSG00000046000' => array(
[maximum depth reached]
),
'ENSMUSG00000050553' => array(
[maximum depth reached]
),
'ENSMUSG00000067161' => array(
[maximum depth reached]
),
'ENSMUSG00000097516' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adipose',
(int) 32 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Brain',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Liver',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000156269' => 'N(alpha)-acetyltransferase 11, NatA catalytic subunit',
'ENSG00000163297' => 'anthrax toxin receptor 2',
'ENSG00000196475' => 'glycerol kinase 2',
'ENSG00000212620' => 'Small nucleolar RNA SNORA75',
'ENSG00000248408' => null,
'ENSG00000249307' => 'long intergenic non-protein coding RNA 1088',
'ENSG00000249646' => 'olfactory receptor, family 7, subfamily E, member 94 pseudogene',
'ENSG00000250334' => 'long intergenic non-protein coding RNA 989',
'ENSG00000251321' => 'prostate cancer associated transcript 4 (non-protein coding)',
'ENSG00000251399' => null,
'ENSMUSG00000029338' => 'anthrax toxin receptor 2',
'ENSMUSG00000046000' => 'N(alpha)-acetyltransferase 11, NatA catalytic subunit',
'ENSMUSG00000050553' => 'glycerol kinase 2',
'ENSMUSG00000067161' => 'predicted pseudogene 5560',
'ENSMUSG00000097516' => 'RIKEN cDNA 4930467D21 gene',
'ENSDARG00000084421' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000156269' => 'NAA11',
'ENSG00000163297' => 'ANTXR2',
'ENSG00000196475' => 'GK2',
'ENSG00000212620' => 'SNORA75',
'ENSG00000248408' => 'RP11-452C8.1',
'ENSG00000249307' => 'LINC01088',
'ENSG00000249646' => 'OR7E94P',
'ENSG00000250334' => 'LINC00989',
'ENSG00000251321' => 'PCAT4',
'ENSG00000251399' => 'RP11-234K19.1',
'ENSMUSG00000029338' => 'Antxr2',
'ENSMUSG00000046000' => 'Naa11',
'ENSMUSG00000050553' => 'Gk2',
'ENSMUSG00000067161' => 'Gm5560',
'ENSMUSG00000097516' => '4930467D21Rik',
'ENSDARG00000084421' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LC_0001',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '78987504',
'seq_end' => '79906161',
'region_length' => '918657',
'region_type' => 'UCNEbase',
'el_id' => 'PRDM8'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LC_0002',
'tax_id' => '10090',
'chromosome' => '5',
'seq_start' => '97148425',
'seq_end' => '97885285',
'region_length' => '736860',
'region_type' => 'UCNEbase',
'el_id' => 'PRDM8'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LC_0003',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '40780537',
'seq_end' => '40991359',
'region_length' => '210822',
'region_type' => 'UCNEbase',
'el_id' => 'PRDM8'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 29 => 'Bladder',
(int) 39 => 'Brain',
(int) 57 => 'Breast',
(int) 72 => 'Colon',
(int) 92 => 'Heart',
(int) 112 => 'Kidney',
(int) 129 => 'Liver',
(int) 142 => 'Lung',
(int) 161 => 'Muscle',
(int) 171 => 'Ovary',
(int) 188 => 'Placenta',
(int) 210 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 40
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000286794' => array(
'start' => '79316653',
'end' => '79326050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NAA11-001'
),
'ENST00000511542' => array(
'start' => '79225694',
'end' => '79325523',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NAA11-002'
),
'ENST00000513733' => array(
'start' => '79225980',
'end' => '79325468',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NAA11-003'
),
'ENST00000307333' => array(
'start' => '79977579',
'end' => '80072563',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-001'
),
'ENST00000346652' => array(
'start' => '79977537',
'end' => '80072700',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-002'
),
'ENST00000403729' => array(
'start' => '79901149',
'end' => '80073086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-004'
),
'ENST00000404191' => array(
'start' => '79907353',
'end' => '80073472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ANTXR2-003'
),
'ENST00000449651' => array(
'start' => '79905571',
'end' => '80071620',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ANTXR2-005'
),
'ENST00000482406' => array(
'start' => '79906762',
'end' => '79964890',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-007'
),
'ENST00000491345' => array(
'start' => '79907170',
'end' => '79965097',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-006'
),
'ENST00000506286' => array(
'start' => '80069436',
'end' => '80125454',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-008'
),
'ENST00000514959' => array(
'start' => '80054281',
'end' => '80079600',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ANTXR2-009'
),
'ENST00000358842' => array(
'start' => '79406352',
'end' => '79408293',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GK2-001'
),
'ENST00000391318' => array(
'start' => '79843102',
'end' => '79843228',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA75.1-207'
),
'ENST00000506460' => array(
'start' => '79663761',
'end' => '79696837',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-452C8.1-001'
),
'ENST00000437737' => array(
'start' => '79211681',
'end' => '79245532',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-010'
),
'ENST00000505149' => array(
'start' => '79305123',
'end' => '79308798',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-006'
),
'ENST00000507476' => array(
'start' => '79195837',
'end' => '79308755',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-005'
),
'ENST00000507761' => array(
'start' => '79195836',
'end' => '79227956',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-008'
),
'ENST00000509088' => array(
'start' => '78971748',
'end' => '79308544',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-001'
),
'ENST00000510667' => array(
'start' => '78971748',
'end' => '79308472',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-004'
),
'ENST00000511241' => array(
'start' => '79258781',
'end' => '79308654',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-007'
),
'ENST00000511895' => array(
'start' => '79211685',
'end' => '79227886',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-009'
),
'ENST00000512130' => array(
'start' => '79197541',
'end' => '79308655',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-003'
),
'ENST00000513153' => array(
'start' => '79085239',
'end' => '79308653',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-002'
),
'ENST00000515597' => array(
'start' => '79195834',
'end' => '79299565',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01088-011'
),
'ENST00000502331' => array(
'start' => '79587757',
'end' => '79588130',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'OR7E94P-001'
),
'ENST00000601375' => array(
'start' => '79587302',
'end' => '79588091',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OR7E94P-002'
),
'ENST00000508174' => array(
'start' => '79492416',
'end' => '79576460',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00989-001'
),
'ENST00000515544' => array(
'start' => '79492593',
'end' => '79576458',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00989-002'
),
'ENST00000504263' => array(
'start' => '79827471',
'end' => '79863247',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'PCAT4-001'
),
'ENST00000514836' => array(
'start' => '79827535',
'end' => '79877770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'PCAT4-002'
),
'ENST00000513155' => array(
'start' => '79596542',
'end' => '79597173',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-234K19.1-001'
),
'ENSMUST00000031281' => array(
'start' => '97882783',
'end' => '98030733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Antxr2-201'
),
'ENSMUST00000060265' => array(
'start' => '97382224',
'end' => '97392330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Naa11-201'
),
'ENSMUST00000059657' => array(
'start' => '97455161',
'end' => '97457008',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gk2-201'
),
'ENSMUST00000086918' => array(
'start' => '97264828',
'end' => '97265719',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5560-001'
),
'ENSMUST00000180634' => array(
'start' => '97392447',
'end' => '97588125',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930467D21Rik-201'
),
'ENSMUST00000181724' => array(
'start' => '97392440',
'end' => '97586878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930467D21Rik-202'
),
'ENSDART00000119821' => array(
'start' => '40925225',
'end' => '40925341',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.662-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LC_0001' => array(
'genes_in_region' => array(
'ENSG00000156269' => array(
[maximum depth reached]
),
'ENSG00000163297' => array(
[maximum depth reached]
),
'ENSG00000196475' => array(
[maximum depth reached]
),
'ENSG00000248408' => array(
[maximum depth reached]
),
'ENSG00000249307' => array(
[maximum depth reached]
),
'ENSG00000249646' => array(
[maximum depth reached]
),
'ENSG00000250334' => array(
[maximum depth reached]
),
'ENSG00000251321' => array(
[maximum depth reached]
),
'ENSG00000251399' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Heart',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Lung',
(int) 8 => 'Placenta',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Ovary',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Breast',
(int) 28 => 'Lung',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Brain',
(int) 60 => 'Kidney',
(int) 61 => 'Testis',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Adipose',
(int) 76 => 'Adrenal',
(int) 77 => 'Breast',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Ovary',
(int) 82 => 'Testis',
(int) 83 => 'Brain',
(int) 84 => 'Colon',
(int) 85 => 'Lung',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Breast',
(int) 89 => 'Placenta',
(int) 90 => 'Adipose',
(int) 91 => 'Bladder',
(int) 92 => 'Breast',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Lung',
(int) 96 => 'Testis',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Brain',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Lung',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Heart',
(int) 110 => 'Kidney',
(int) 111 => 'Liver',
(int) 112 => 'Lung',
(int) 113 => 'Muscle',
(int) 114 => 'Ovary',
(int) 115 => 'Placenta',
(int) 116 => 'Adrenal',
(int) 117 => 'Brain',
(int) 118 => 'Colon',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Testis',
(int) 123 => 'Muscle',
(int) 124 => 'Placenta',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Brain',
(int) 133 => 'Colon',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Adipose',
(int) 137 => 'Adrenal',
(int) 138 => 'Bladder',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Lung',
(int) 146 => 'Muscle',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Adipose',
(int) 151 => 'Adrenal',
(int) 152 => 'Bladder',
(int) 153 => 'Colon',
(int) 154 => 'Heart',
(int) 155 => 'Lung',
(int) 156 => 'Ovary',
(int) 157 => 'Placenta',
(int) 158 => 'Testis',
(int) 159 => 'Adipose',
(int) 160 => 'Adrenal',
(int) 161 => 'Bladder',
(int) 162 => 'Brain',
(int) 163 => 'Breast',
(int) 164 => 'Colon',
(int) 165 => 'Heart',
(int) 166 => 'Kidney',
(int) 167 => 'Liver',
(int) 168 => 'Lung',
(int) 169 => 'Muscle',
(int) 170 => 'Ovary',
(int) 171 => 'Placenta',
(int) 172 => 'Testis',
(int) 173 => 'Heart',
(int) 174 => 'Lung',
(int) 175 => 'Testis',
(int) 176 => 'Adipose',
(int) 177 => 'Adrenal',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Ovary',
(int) 182 => 'Testis'
)
),
'CIL_0007LC_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000029338' => array(
[maximum depth reached]
),
'ENSMUSG00000046000' => array(
[maximum depth reached]
),
'ENSMUSG00000050553' => array(
[maximum depth reached]
),
'ENSMUSG00000067161' => array(
[maximum depth reached]
),
'ENSMUSG00000097516' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adipose',
(int) 32 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Brain',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Liver',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LC_0003',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '40780537',
'seq_end' => '40991359',
'region_length' => '210822',
'region_type' => 'UCNEbase',
'el_id' => 'PRDM8'
)
)
$gene_el = array(
'ENSMUST00000180634' => array(
'Brain' => array(
'average_FPKM' => '0.016',
'stddev_FPKM' => '0.01'
),
'Placenta' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.309',
'stddev_FPKM' => '0.09'
)
),
'ENSMUST00000181724' => array(
'Liver' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.027',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.014',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.821',
'stddev_FPKM' => '0.34'
)
)
)
$gene_key = 'ENSMUSG00000097516'
$is_first = false
$tran_el = array(
'Liver' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.027',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.014',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.821',
'stddev_FPKM' => '0.34'
)
)
$tran_key = 'ENSMUST00000181724'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(NAA11)