C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008BO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs390 VISTA 9606 2:57445240-58046040
GeneTranscriptPositionBiotype
ENSG00000028116 (VRK2)
vaccinia related kinase 2 		ENST00000340157 (VRK2-001) 58046691-58159871 protein_coding
ENST00000412104 (VRK2-201) 58046642-58159920 protein_coding
ENST00000417641 (VRK2-004) 57907651-58159871 protein_coding
ENST00000428021 (VRK2-003) 58046875-58084927 protein_coding
ENST00000432057 (VRK2-002) 58046712-58159784 nonsense_mediated_decay
ENST00000435505 (VRK2-005) 57907651-58159867 protein_coding
ENST00000440705 (VRK2-008) 58046715-58159784 protein_coding
ENST00000463222 (VRK2-007) 57907656-58033327 processed_transcript
ENST00000478687 (VRK2-006) 57907652-58033663 processed_transcript
ENSG00000212168 (SNORD78)
Small nucleolar RNA SNORD78 		ENST00000390866 (SNORD78.1-201) 57544535-57544599 snoRNA
ENSG00000271615 (CTD-2026C7.1)
 ENST00000603793 (CTD-2026C7.1-001) 57764954-57766052 transcribed_processed_pseudogene
ENST00000605503 (CTD-2026C7.1-002) 57755428-57765210 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0008BO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs390 VISTA 10090 11:26675528-27276371
GeneTranscriptPositionBiotype
ENSMUSG00000069939 (Gm12070)
predicted gene 12070 		ENSMUST00000119551 (Gm12070-001) 26786633-26787634 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008BO_0001ENSG00000028116ENST00000340157ENST00000412104ENST00000417641ENST00000428021ENST00000432057ENST00000435505ENST00000440705ENST00000463222ENST00000478687ENSG00000212168ENST00000390866ENSG00000271615ENST00000603793ENST00000605503CIL_0008BO_0002ENSMUSG00000069939ENSMUST00000119551
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008BO_0001ENSG00000028116ENST00000340157ENST00000417641ENST00000432057ENST00000440705ENSG00000212168ENST00000390866ENSG00000271615ENST00000603793ENST00000605503CIL_0008BO_0002ENSMUSG00000069939ENSMUST00000119551
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000028116 ENST00000340157 2.917±0.00 N/A N/A N/A 3.562±0.00 2.028±0.00 3.403±2.42 2.508±0.00 2.809±0.00 N/A 1.861±0.00 7.673±0.00 2.246±0.06 4.781±0.00
ENST00000412104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417641 N/A N/A N/A 1.936±0.00 N/A N/A 0.666±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000428021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.128±0.00
ENST00000435505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440705 N/A N/A N/A N/A 2.706±0.00 2.269±0.00 N/A 1.515±0.00 N/A 1.135±0.00 1.388±0.00 14.005±0.00 2.998±2.03 5.048±0.00
ENST00000463222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212168 ENST00000390866 N/A 0.507±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271615 ENST00000603793 N/A N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A N/A 0.176±0.00 0.043±0.00 N/A N/A
ENST00000605503 N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A 0.071±0.00 N/A 0.043±0.00 N/A 0.204±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000069939 ENSMUST00000119551 0.141±0.05 0.096±0.03 16.135±16.05 51.135±10.75 0.102±0.01 0.067±0.03 0.150±0.05 0.090±0.04 16.466±28.36 0.062±0.03 0.120±0.09 0.127±0.06 0.144±0.01 0.060±0.00

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