C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: vaccinia related kinase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000432057 VRK2-002 ENSG00000028116 9606 + 2:58046712-58159784 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000432057
Transcript ID Testis
ENST00000432057 6.128±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BO CIL_0008BO_0001 VISTA 2:57445240-58046040
CIL_0007ZI CIL_0007ZI_0001 VISTA 2:57618972-58220354
CIL_0007LM CIL_0007LM_0001 UCNEbase 2:57740887-60568309
CIL_0007WS CIL_0007WS_0001 VISTA 2:57829929-58432668

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078362 Vrk2-201 protein_coding Mus_musculus 0 942
ENSMUST00000109504 Vrk2-001 protein_coding Mus_musculus 0 942
ENSMUST00000133487 Vrk2-006 processed_transcript Mus_musculus 3e-40 171
ENSMUST00000124294 Vrk2-003 retained_intron Mus_musculus 5e-28 130

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