C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008YC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm265 VISTA 9606 6:21546248-22147982
GeneTranscriptPositionBiotype
ENSG00000124766 (SOX4)
SRY (sex determining region Y)-box 4 		ENST00000244745 (SOX4-001) 21592769-21598619 protein_coding
ENSG00000220771 (RP3-322L4.2)
 ENST00000404566 (RP3-322L4.2-001) 21602128-21602383 processed_pseudogene
ENSG00000222515 (RN7SKP240)
RNA, 7SK small nuclear pseudogene 240 		ENST00000410583 (RN7SKP240-201) 22085544-22085918 misc_RNA
ENSG00000260455 (CASC14)
cancer susceptibility candidate 14 (non-protein coding) 		ENST00000566912 (CASC14-001) 22134957-22147193 lincRNA
ENSG00000272168 (CASC15)
cancer susceptibility candidate 15 (non-protein coding) 		ENST00000444265 (CASC15-002) 21898720-22214505 lincRNA
ENST00000605917 (CASC15-006) 22147208-22151668 lincRNA
ENST00000606197 (CASC15-004) 22146654-22197219 lincRNA
ENST00000606336 (CASC15-005) 21664772-21909837 lincRNA
ENST00000606851 (CASC15-003) 21666444-22194387 lincRNA
ENST00000607048 (CASC15-001) 21668819-22194385 lincRNA
ENSG00000280443 (RP4-551N11.1)
 ENST00000624804 (RP4-551N11.1-001) 21822536-21822737 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008YC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm265 VISTA 10090 13:28417646-29019441
GeneTranscriptPositionBiotype
ENSMUSG00000076431 (Sox4)
SRY (sex determining region Y)-box 4 		ENSMUST00000067230 (Sox4-001) 28948919-28953713 protein_coding
ENSMUSG00000082861 (Gm11362)
predicted gene 11362 		ENSMUST00000118838 (Gm11362-001) 28836875-28837724 processed_pseudogene
ENSMUSG00000085936 (2610307P16Rik)
RIKEN cDNA 2610307P16 gene 		ENSMUST00000122881 (2610307P16Rik-002) 28460778-28480841 processed_transcript
ENSMUST00000125358 (2610307P16Rik-003) 28561484-28883456 processed_transcript
ENSMUST00000134624 (2610307P16Rik-006) 28668650-28885344 processed_transcript
ENSMUST00000134787 (2610307P16Rik-007) 28460034-28521108 processed_transcript
ENSMUST00000148885 (2610307P16Rik-001) 28460778-28885620 processed_transcript
ENSMUST00000154298 (2610307P16Rik-004) 28460941-28516781 processed_transcript
ENSMUST00000155292 (2610307P16Rik-005) 28505717-28516940 processed_transcript
ENSMUSG00000086363 (A330102I10Rik)
RIKEN cDNA A330102I10 gene 		ENSMUST00000130109 (A330102I10Rik-001) 29014472-29028729 lincRNA
ENSMUST00000140415 (A330102I10Rik-004) 29016293-29028797 lincRNA
ENSMUST00000145801 (A330102I10Rik-003) 29016708-29040336 lincRNA
ENSMUST00000146336 (A330102I10Rik-002) 29014399-29015665 lincRNA
ENSMUSG00000086785 (Gm6081)
predicted gene 6081 		ENSMUST00000134472 (Gm6081-001) 28510744-28511232 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YC_0001ENSG00000124766ENST00000244745ENSG00000220771ENST00000404566ENSG00000222515ENST00000410583ENSG00000260455ENST00000566912ENSG00000272168ENST00000444265ENST00000605917ENST00000606197ENST00000606336ENST00000606851ENST00000607048ENSG00000280443ENST00000624804CIL_0008YC_0002ENSMUSG00000076431ENSMUST00000067230ENSMUSG00000082861ENSMUST00000118838ENSMUSG00000085936ENSMUST00000122881ENSMUST00000125358ENSMUST00000134624ENSMUST00000134787ENSMUST00000148885ENSMUST00000154298ENSMUST00000155292ENSMUSG00000086363ENSMUST00000130109ENSMUST00000140415ENSMUST00000145801ENSMUST00000146336ENSMUSG00000086785ENSMUST00000134472
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YC_0001ENSG00000124766ENST00000244745ENSG00000220771ENST00000404566ENSG00000222515ENST00000410583ENSG00000260455ENST00000566912ENSG00000272168ENST00000444265ENST00000605917ENST00000606197ENST00000606336ENST00000606851ENST00000607048ENSG00000280443ENST00000624804CIL_0008YC_0002ENSMUSG00000076431ENSMUST00000067230ENSMUSG00000082861ENSMUST00000118838ENSMUSG00000085936ENSMUST00000122881ENSMUST00000125358ENSMUST00000134624ENSMUST00000134787ENSMUST00000148885ENSMUST00000154298ENSMUST00000155292ENSMUSG00000086363ENSMUST00000130109ENSMUST00000140415ENSMUST00000145801ENSMUST00000146336ENSMUSG00000086785ENSMUST00000134472
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124766 ENST00000244745 16.320±0.00 3.634±0.00 2.170±0.00 0.652±0.20 10.646±3.38 4.545±2.04 0.940±0.33 3.681±3.52 1.064±0.61 10.664±8.04 0.920±0.55 18.198±8.15 5.241±3.14 13.899±5.27
ENSG00000220771 ENST00000404566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.291±0.00 N/A 0.137±0.00
ENSG00000222515 ENST00000410583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.389±0.18 N/A N/A
ENSG00000260455 ENST00000566912 N/A N/A N/A N/A N/A 0.253±0.00 N/A 0.244±0.00 N/A N/A 0.084±0.00 N/A 0.031±0.01 N/A
ENSG00000272168 ENST00000444265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00 1.143±0.00 N/A 0.929±0.00
ENST00000605917 0.056±0.00 0.087±0.00 0.440±0.00 0.696±0.30 0.505±0.34 0.171±0.10 0.184±0.00 0.156±0.00 0.405±0.00 0.370±0.29 0.088±0.00 0.556±0.22 0.044±0.00 N/A
ENST00000606197 N/A N/A N/A 1.665±0.00 0.233±0.00 0.174±0.00 0.183±0.00 0.193±0.00 0.313±0.00 0.194±0.00 0.069±0.00 0.366±0.22 0.044±0.02 N/A
ENST00000606336 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.517±0.00 N/A 0.392±0.00 0.109±0.00 0.304±0.00
ENST00000606851 N/A N/A N/A N/A 1.184±0.00 N/A 0.715±0.00 N/A N/A N/A N/A 1.480±0.17 N/A N/A
ENST00000607048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.090±0.03 N/A
ENSG00000280443 ENST00000624804 N/A N/A N/A N/A 1.394±1.34 N/A N/A N/A N/A N/A N/A N/A N/A 0.140±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000076431 ENSMUST00000067230 21.778±11.75 24.599±3.55 10.782±1.50 96.090±71.39 19.611±11.87 14.696±1.59 4.543±0.87 5.256±1.77 1.501±1.12 19.641±4.43 0.649±0.19 113.057±44.33 4.087±1.41 0.804±0.28
ENSMUSG00000082861 ENSMUST00000118838 0.156±0.05 0.086±0.00 N/A 0.413±0.00 0.270±0.01 0.086±0.00 0.079±0.03 0.111±0.07 0.060±0.04 0.200±0.09 0.070±0.01 0.154±0.02 0.105±0.01 0.074±0.03
ENSMUSG00000085936 ENSMUST00000122881 0.515±0.00 0.392±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.323±0.00 N/A N/A N/A
ENSMUST00000125358 0.106±0.00 N/A N/A 2.193±0.00 0.182±0.00 0.300±0.14 0.162±0.01 0.445±0.14 0.156±0.05 1.620±0.58 0.250±0.15 0.730±0.37 0.117±0.06 1.191±0.00
ENSMUST00000134624 0.930±0.76 0.186±0.00 N/A 4.672±0.00 1.091±1.03 0.406±0.20 0.633±0.27 0.438±0.00 0.241±0.08 1.205±0.00 0.258±0.00 0.700±0.46 0.422±0.00 N/A
ENSMUST00000134787 0.094±0.02 0.083±0.00 N/A 1.513±0.00 0.374±0.13 0.092±0.01 0.165±0.04 0.215±0.06 0.063±0.01 0.808±0.00 0.087±0.04 0.517±0.21 0.055±0.00 N/A
ENSMUST00000148885 0.413±0.40 0.047±0.00 0.958±0.03 1.368±1.36 0.362±0.27 0.148±0.04 0.141±0.02 0.386±0.10 0.078±0.03 0.858±0.20 0.126±0.03 0.478±0.24 0.120±0.06 0.631±0.31
ENSMUST00000154298 N/A 0.236±0.00 N/A 0.326±0.00 0.869±0.16 0.265±0.00 0.530±0.00 1.176±0.54 0.342±0.00 N/A 0.396±0.10 1.365±0.26 0.524±0.32 2.075±0.00
ENSMUST00000155292 N/A N/A N/A N/A 0.533±0.00 N/A N/A N/A N/A N/A N/A 1.057±0.00 N/A N/A
ENSMUSG00000086363 ENSMUST00000130109 0.097±0.00 N/A 0.183±0.00 N/A 0.389±0.21 0.182±0.01 0.481±0.28 0.130±0.06 N/A N/A 0.143±0.02 0.276±0.13 0.369±0.03 0.141±0.03
ENSMUST00000140415 0.485±0.02 0.140±0.00 0.048±0.00 5.089±0.63 0.133±0.00 0.175±0.07 0.983±0.23 N/A 0.017±0.00 0.118±0.02 0.151±0.03 0.207±0.13 0.084±0.02 0.063±0.00
ENSMUST00000145801 N/A N/A N/A N/A N/A 0.315±0.00 N/A 0.055±0.00 N/A N/A 0.054±0.01 N/A 0.055±0.02 N/A
ENSMUST00000146336 N/A N/A N/A 9.214±0.00 N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 0.099±0.01 N/A
ENSMUSG00000086785 ENSMUST00000134472 0.247±0.00 N/A 0.059±0.04 0.201±0.06 N/A N/A N/A 0.104±0.00 0.043±0.00 0.178±0.03 0.065±0.00 0.510±0.10 0.015±0.00 0.900±0.00

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