C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000926_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1436 VISTA 9606 3:54683448-55284533
GeneTranscriptPositionBiotype
ENSG00000144771 (LRTM1)
leucine-rich repeats and transmembrane domains 1 		ENST00000273286 (LRTM1-001) 54918237-54928074 protein_coding
ENST00000493075 (LRTM1-002) 54918333-54967088 protein_coding
ENSG00000239991 (RP11-889D3.1)
 ENST00000485347 (RP11-889D3.1-001) 55166910-55175732 lincRNA
ENSG00000243572 (RP11-889D3.2)
 ENST00000496829 (RP11-889D3.2-001) 55178172-55189214 lincRNA
ENSG00000243715 (CACNA2D3-AS1)
CACNA2D3 antisense RNA 1 		ENST00000471265 (CACNA2D3-AS1-001) 54874605-54901255 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_000926_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1436 VISTA 10090 14:28672334-29273645
GeneTranscriptPositionBiotype
ENSMUSG00000021991 (Cacna2d3)
calcium channel, voltage-dependent, alpha2/delta subunit 3 		ENSMUST00000022567 (Cacna2d3-001) 28904943-29721864 protein_coding
ENSMUSG00000045776 (Lrtm1)
leucine-rich repeats and transmembrane domains 1 		ENSMUST00000055662 (Lrtm1-201) 29018208-29033642 protein_coding
ENSMUSG00000075245 (Gm6043)
predicted gene 6043 		ENSMUST00000099961 (Gm6043-201) 29217639-29218130 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000926_0001ENSG00000144771ENST00000273286ENST00000493075ENSG00000239991ENST00000485347ENSG00000243572ENST00000496829ENSG00000243715ENST00000471265CIL_000926_0002ENSMUSG00000021991ENSMUST00000022567ENSMUSG00000045776ENSMUST00000055662ENSMUSG00000075245ENSMUST00000099961
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000926_0001ENSG00000144771ENST00000273286ENST00000493075ENSG00000239991ENST00000485347ENSG00000243572ENST00000496829ENSG00000243715ENST00000471265CIL_000926_0002ENSMUSG00000021991ENSMUST00000022567ENSMUSG00000045776ENSMUST00000055662ENSMUSG00000075245ENSMUST00000099961
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144771 ENST00000273286 N/A 0.054±0.00 N/A 0.057±0.00 0.043±0.00 N/A N/A 0.011±0.00 N/A 0.068±0.00 0.121±0.00 N/A N/A N/A
ENST00000493075 N/A N/A 0.277±0.00 0.149±0.13 N/A N/A 0.027±0.00 N/A 0.167±0.00 0.140±0.00 0.151±0.00 0.144±0.05 0.038±0.00 0.036±0.00
ENSG00000239991 ENST00000485347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.093±0.03
ENSG00000243572 ENST00000496829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.290±0.00
ENSG00000243715 ENST00000471265 N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A 0.734±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021991 ENSMUST00000022567 0.345±0.31 0.661±0.12 0.690±0.00 24.559±14.36 0.117±0.07 0.324±0.17 0.219±0.12 0.049±0.02 0.009±0.01 0.156±0.07 0.221±0.10 1.064±0.42 0.510±0.78 0.514±0.09
ENSMUSG00000045776 ENSMUST00000055662 0.312±0.10 0.091±0.03 0.010±0.00 0.067±0.07 0.824±0.23 0.012±0.00 37.282±4.67 0.097±0.06 1.877±1.82 0.381±0.31 3.978±1.12 0.114±0.04 0.005±0.00 0.042±0.03
ENSMUSG00000075245 ENSMUST00000099961 0.220±0.13 N/A 0.041±0.02 0.125±0.04 N/A N/A N/A N/A 0.051±0.03 N/A 0.150±0.00 0.402±0.22 0.071±0.04 0.089±0.00

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