C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, alpha2/delta subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022567 Cacna2d3-001 ENSMUSG00000021991 10090 - 14:28904943-29721864 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022567 0.345±0.31 0.661±0.12 0.690±0.00 24.559±14.36 0.117±0.07 0.324±0.17 0.219±0.12 0.049±0.02 0.009±0.01 0.156±0.07 0.221±0.10 1.064±0.42 0.510±0.78 0.514±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00002U CIL_00002U_0002 CGP 14:28504750-29721864
CIL_000926 CIL_000926_0002 VISTA 14:28672334-29273645
CIL_0001F9 CIL_0001F9_0003 CGP 14:28904943-29721864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IEA voltage-gated calcium channel activity
GO:0006816 IEA calcium ion transport
GO:0016021 IEA integral component of membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288197 CACNA2D3-201 protein_coding Homo_sapiens 0 4518
ENST00000415676 CACNA2D3-202 protein_coding Homo_sapiens 0 4447
ENST00000468658 CACNA2D3-005 nonsense_mediated_decay Homo_sapiens 0 1962
ENST00000471363 CACNA2D3-003 nonsense_mediated_decay Homo_sapiens 0 2109
ENST00000471865 CACNA2D3-008 retained_intron Homo_sapiens 0 446
ENST00000474759 CACNA2D3-001 protein_coding Homo_sapiens 0 4525
ENST00000477024 CACNA2D3-004 nonsense_mediated_decay Homo_sapiens 0 2145
ENST00000478261 CACNA2D3-009 processed_transcript Homo_sapiens 0 464
ENST00000490478 CACNA2D3-002 protein_coding Homo_sapiens 0 4355
ENST00000492460 CACNA2D3-006 protein_coding Homo_sapiens 0 625
ENST00000620722 CACNA2D3-203 protein_coding Homo_sapiens 0 2050

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