C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009D6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1212 VISTA 9606 2:102621903-103223410
GeneTranscriptPositionBiotype
ENSG00000115616 (SLC9A2)
solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2 		ENST00000233969 (SLC9A2-001) 102619707-102711318 protein_coding
ENST00000467657 (SLC9A2-003) 102684298-102686768 retained_intron
ENST00000469286 (SLC9A2-002) 102689694-102702451 processed_transcript
ENSG00000135953 (MFSD9)
major facilitator superfamily domain containing 9 		ENST00000258436 (MFSD9-001) 102715840-102736854 protein_coding
ENST00000411991 (MFSD9-002) 102718814-102736878 nonsense_mediated_decay
ENST00000421966 (MFSD9-006) 102726918-102736888 nonsense_mediated_decay
ENST00000428085 (MFSD9-005) 102719004-102732340 nonsense_mediated_decay
ENST00000437075 (MFSD9-004) 102717571-102736878 nonsense_mediated_decay
ENST00000438943 (MFSD9-003) 102717038-102736878 nonsense_mediated_decay
ENST00000462099 (MFSD9-007) 102732286-102736839 retained_intron
ENST00000496253 (MFSD9-008) 102715840-102718334 processed_transcript
ENSG00000170417 (TMEM182)
transmembrane protein 182 		ENST00000409173 (TMEM182-004) 102736911-102817420 protein_coding
ENST00000409528 (TMEM182-003) 102736908-102817416 protein_coding
ENST00000412401 (TMEM182-001) 102762013-102817666 protein_coding
ENST00000454536 (TMEM182-002) 102736908-102797900 protein_coding
ENST00000469971 (TMEM182-006) 102736932-102775518 processed_transcript
ENST00000484094 (TMEM182-005) 102797766-102816316 retained_intron
ENST00000486293 (TMEM182-007) 102762599-102843893 processed_transcript
ENST00000488134 (TMEM182-008) 102736946-102815104 processed_transcript
ENSG00000224095 (AC108051.1)
 ENST00000431897 (AC108051.1-001) 102967408-102984429 lincRNA
ENSG00000224850 (AC108051.3)
 ENST00000453878 (AC108051.3-002) 103011779-103019898 lincRNA
ENSG00000227680 (AC108051.2)
 ENST00000435291 (AC108051.2-001) 102987323-102988565 lincRNA
ENSG00000229209 (AC073987.1)
 ENST00000422683 (AC073987.1-001) 103109759-103176260 lincRNA
ENSG00000277527 (AC007251.2)
 ENST00000611915 (AC007251.2-001) 102873339-102895722 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0009D6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1212 VISTA 10090 1:40642805-41244270
GeneTranscriptPositionBiotype
ENSMUSG00000026062 (Slc9a2)
solute carrier family 9 (sodium/hydrogen exchanger), member 2 		ENSMUST00000027231 (Slc9a2-201) 40681712-40768885 protein_coding
ENSMUSG00000041945 (Mfsd9)
major facilitator superfamily domain containing 9 		ENSMUST00000039672 (Mfsd9-001) 40772038-40790663 protein_coding
ENSMUST00000131390 (Mfsd9-002) 40772041-40790687 nonsense_mediated_decay
ENSMUST00000144385 (Mfsd9-003) 40781230-40790657 retained_intron
ENSMUSG00000079588 (Tmem182)
transmembrane protein 182 		ENSMUST00000114765 (Tmem182-001) 40805601-40855944 protein_coding
ENSMUSG00000094136 (Gm5973)
predicted gene 5973 		ENSMUST00000178542 (Gm5973-201) 40863734-40864219 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009D6_0001ENSG00000115616ENST00000233969ENST00000467657ENST00000469286ENSG00000135953ENST00000258436ENST00000411991ENST00000421966ENST00000428085ENST00000437075ENST00000438943ENST00000462099ENST00000496253ENSG00000170417ENST00000409173ENST00000409528ENST00000412401ENST00000454536ENST00000469971ENST00000484094ENST00000486293ENST00000488134ENSG00000224095ENST00000431897ENSG00000224850ENST00000453878ENSG00000227680ENST00000435291ENSG00000229209ENST00000422683ENSG00000277527ENST00000611915CIL_0009D6_0002ENSMUSG00000026062ENSMUST00000027231ENSMUSG00000041945ENSMUST00000039672ENSMUST00000131390ENSMUST00000144385ENSMUSG00000079588ENSMUST00000114765ENSMUSG00000094136ENSMUST00000178542
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009D6_0001ENSG00000115616ENST00000233969ENSG00000135953ENST00000258436ENST00000411991ENST00000421966ENST00000437075ENST00000438943ENST00000462099ENSG00000170417ENST00000409173ENST00000409528ENST00000412401ENST00000469971ENST00000484094ENST00000486293ENST00000488134ENSG00000224095ENST00000431897ENSG00000224850ENST00000453878ENSG00000227680ENST00000435291ENSG00000229209ENST00000422683ENSG00000277527ENST00000611915CIL_0009D6_0002ENSMUSG00000026062ENSMUST00000027231ENSMUSG00000041945ENSMUST00000039672ENSMUST00000131390ENSMUSG00000079588ENSMUST00000114765ENSMUSG00000094136ENSMUST00000178542
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115616 ENST00000233969 0.006±0.00 0.014±0.00 1.137±0.00 0.306±0.19 0.282±0.11 4.753±4.32 0.074±0.00 2.097±0.00 N/A 0.050±0.00 0.637±0.23 0.029±0.02 0.006±0.00 1.366±0.48
ENST00000467657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000135953 ENST00000258436 1.026±0.00 0.718±0.00 N/A N/A 1.645±0.00 N/A N/A N/A 0.528±0.00 N/A N/A 0.540±0.32 0.981±0.34 0.567±0.00
ENST00000411991 N/A N/A N/A 0.178±0.00 N/A N/A N/A N/A N/A 0.470±0.00 N/A N/A N/A N/A
ENST00000421966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.806±0.00
ENST00000428085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437075 N/A N/A 0.434±0.00 N/A 0.788±0.00 0.555±0.00 N/A N/A N/A 0.217±0.00 0.181±0.09 0.568±0.00 0.480±0.09 0.491±0.00
ENST00000438943 0.645±0.00 0.595±0.00 N/A 0.173±0.00 N/A N/A 0.010±0.00 N/A N/A N/A 0.162±0.00 0.714±0.00 0.395±0.00 N/A
ENST00000462099 N/A N/A N/A N/A N/A N/A N/A 2.568±0.00 N/A N/A N/A N/A N/A N/A
ENST00000496253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170417 ENST00000409173 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.202±0.00 N/A 0.560±0.00 0.179±0.00 0.296±0.00
ENST00000409528 N/A 0.232±0.00 N/A 0.131±0.00 N/A 0.229±0.00 N/A N/A 0.645±0.00 N/A N/A 0.203±0.00 N/A 0.216±0.00
ENST00000412401 0.062±0.00 N/A N/A 0.253±0.00 3.479±0.00 0.383±0.00 22.379±6.94 N/A N/A N/A 4.803±1.51 0.376±0.12 0.111±0.02 0.384±0.17
ENST00000454536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469971 0.437±0.00 2.436±0.00 3.635±0.00 3.734±1.31 N/A 7.280±0.00 N/A 3.253±1.99 13.093±0.00 4.139±3.91 N/A 4.565±4.09 0.291±0.00 1.890±0.30
ENST00000484094 0.139±0.00 0.339±0.00 N/A 0.321±0.00 N/A N/A N/A N/A N/A N/A 4.141±0.00 N/A N/A 0.309±0.00
ENST00000486293 0.200±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.168±0.00 N/A
ENST00000488134 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.237±0.00 N/A 4.657±0.00 1.039±0.00 N/A
ENSG00000224095 ENST00000431897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A
ENSG00000224850 ENST00000453878 N/A N/A N/A 0.894±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.204±0.00
ENSG00000227680 ENST00000435291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00
ENSG00000229209 ENST00000422683 0.062±0.00 0.168±0.00 N/A 0.241±0.00 0.145±0.00 0.097±0.00 0.039±0.00 0.083±0.00 0.018±0.00 0.074±0.00 N/A 0.095±0.04 N/A 0.247±0.00
ENSG00000277527 ENST00000611915 N/A N/A N/A N/A N/A 0.059±0.00 N/A N/A N/A N/A N/A 0.036±0.00 N/A 0.498±0.29
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026062 ENSMUST00000027231 0.225±0.04 0.154±0.08 2.361±0.18 0.440±0.50 1.721±1.39 77.893±19.12 1.716±0.13 11.498±3.74 0.012±0.01 1.620±0.35 6.908±2.45 1.298±0.63 1.159±1.05 3.107±1.18
ENSMUSG00000041945 ENSMUST00000039672 1.820±0.19 2.714±0.57 1.090±0.30 1.002±0.23 1.538±0.26 8.274±1.72 0.266±0.10 6.291±1.01 0.667±0.31 1.453±0.19 0.178±0.05 2.961±0.75 1.323±0.33 5.151±1.76
ENSMUST00000131390 0.254±0.04 0.449±0.03 N/A N/A 0.183±0.00 0.881±0.00 0.090±0.00 N/A 0.083±0.00 N/A 0.165±0.04 0.397±0.07 N/A N/A
ENSMUST00000144385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079588 ENSMUST00000114765 20.608±0.00 1.664±0.35 N/A 0.031±0.02 N/A 0.321±0.17 32.924±1.64 0.615±0.22 0.007±0.00 1.211±0.00 61.881±18.57 1.209±0.55 0.009±0.01 0.243±0.15
ENSMUSG00000094136 ENSMUST00000178542 0.253±0.05 N/A N/A N/A N/A N/A 0.141±0.05 N/A N/A N/A 0.101±0.03 0.104±0.00 N/A 0.093±0.00

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