C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 9 (sodium/hydrogen exchanger), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027231 Slc9a2-201 ENSMUSG00000026062 10090 + 1:40681712-40768885 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027231
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027231 0.225±0.04 0.154±0.08 2.361±0.18 0.440±0.50 1.721±1.39 77.893±19.12 1.716±0.13 11.498±3.74 0.012±0.01 1.620±0.35 6.908±2.45 1.298±0.63 1.159±1.05 3.107±1.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QU CIL_0004QU_0002 CGP 1:40580227-40768885
CIL_0009D6 CIL_0009D6_0002 VISTA 1:40642805-41244270
CIL_0008NY CIL_0008NY_0002 VISTA 1:40654286-41255586
CIL_0008GZ CIL_0008GZ_0002 VISTA 1:40667279-41268275
CIL_0004QT CIL_0004QT_0002 CGP 1:40681712-40790687

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005903 TAS brush border
GO:0006814 IDA sodium ion transport
GO:0006885 IDA regulation of pH
GO:0008104 IMP protein localization
GO:0015385 IDA sodium:proton antiporter activity
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233969 SLC9A2-001 protein_coding Homo_sapiens 0 2477
ENST00000295269 SLC9A4-001 protein_coding Homo_sapiens 0 536
ENST00000492154 SLC9A4-002 retained_intron Homo_sapiens 0 331

Loading