C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000005168 ddx55-001 ENSDARG00000009864 7955 - 10:3405373-3423760 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000005168
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000005168 1.838±0.57 1.823±1.32 3.434±3.26 1.297±0.00 1.862±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0008026 IEA ATP-dependent helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238146 DDX55-001 protein_coding Homo_sapiens 0 542
ENST00000354291 DDX55-012 nonsense_mediated_decay Homo_sapiens 0 191
ENST00000538744 DDX55-004 protein_coding Homo_sapiens 0 370
ENST00000539934 DDX55-002 retained_intron Homo_sapiens 0 387
ENST00000541259 DDX55-015 processed_transcript Homo_sapiens 8e-36 154
ENST00000542286 DDX55-003 retained_intron Homo_sapiens 0 429
ENST00000544738 DDX55-009 nonsense_mediated_decay Homo_sapiens 0 385

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