C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000238146 DDX55-001 ENSG00000111364 9606 + 12:123602099-123620941 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverOvaryENST00000238146
Transcript ID Brain Kidney Liver Ovary
ENST00000238146 1.759±0.00 0.994±0.00 1.020±0.00 3.378±2.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J8 CIL_0003J8_0001 CGP 12:123584531-123620941
CIL_000395 CIL_000395_0001 CGP 12:123602077-123633766

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016020 IDA membrane
GO:0016787 IEA hydrolase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071057 Ddx55-001 protein_coding Mus_musculus 0 1930
ENSMUST00000111438 Ddx55-002 protein_coding Mus_musculus 0 1853
ENSMUST00000131631 Ddx55-003 retained_intron Mus_musculus 0 1306
ENSDART00000005168 ddx55-001 protein_coding Danio_rerio 0 542
ENSMUST00000142451 Ddx55-005 processed_transcript Mus_musculus 0 278
ENSMUST00000074912 2010012O05Rik-201 protein_coding Mus_musculus 0.0000000001 73

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