C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538744 DDX55-004 ENSG00000111364 9606 + 12:123602128-123620144 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000538744
Transcript ID Ovary Placenta Testis
ENST00000538744 7.188±0.00 4.988±0.00 4.946±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J8 CIL_0003J8_0001 CGP 12:123584531-123620941
CIL_000395 CIL_000395_0001 CGP 12:123602077-123633766

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111438 Ddx55-002 protein_coding Mus_musculus 0 1061
ENSMUST00000071057 Ddx55-001 protein_coding Mus_musculus 0 1061
ENSMUST00000131631 Ddx55-003 retained_intron Mus_musculus 0 789
ENSDART00000005168 ddx55-001 protein_coding Danio_rerio 0 370
ENSMUST00000142451 Ddx55-005 processed_transcript Mus_musculus 5e-33 147

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