C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY-box containing gene 9a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000005676 sox9a-001 ENSDARG00000003293 7955 - 12:2153723-2157363 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000005676
Transcript ID Heart Kidney Liver Muscle
ENSDART00000005676 1.136±1.08 0.084±0.00 0.047±0.00 2.098±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IMP cytoplasm
GO:0030916 IGI otic vesicle formation
GO:0033339 IMP pectoral fin development
GO:0035118 IMP embryonic pectoral fin morphogenesis
GO:0043049 IGI otic placode formation
GO:0048708 IMP astrocyte differentiation
GO:0048709 IMP oligodendrocyte differentiation
GO:0048839 IMP inner ear development
GO:0051216 IMP cartilage development
GO:0060536 IMP cartilage morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000579 Sox9-001 protein_coding Mus_musculus 0 603
ENST00000245479 SOX9-001 protein_coding Homo_sapiens 0 647
ENST00000293894 SOX8-001 protein_coding Homo_sapiens 0 316
ENST00000566034 SOX8-002 retained_intron Homo_sapiens 9e-29 134

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