C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhodopsin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000027000 rho-001 ENSDARG00000002193 7955 - 8:55706882-55708436 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleENSDART00000027000
Transcript ID Brain Heart Muscle
ENSDART00000027000 1.607±1.01 0.074±0.00 0.064±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0004871 IEA signal transducer activity
GO:0004930 IEA G-protein coupled receptor activity
GO:0007165 IEA signal transduction
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007602 IEA phototransduction
GO:0008020 IDA G-protein coupled photoreceptor activity
GO:0009584 IDA detection of visible light
GO:0009881 IEA photoreceptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0016038 IDA absorption of visible light
GO:0018298 IEA protein-chromophore linkage
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032471 Rho-201 protein_coding Mus_musculus 0 760
ENST00000296271 RHO-001 protein_coding Homo_sapiens 0 811

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