C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhodopsin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032471 Rho-201 ENSMUSG00000030324 10090 + 6:115931927-115938829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032471
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032471 0.167±0.14 0.427±0.08 0.041±0.00 0.207±0.10 0.145±0.05 0.053±0.02 0.085±0.06 0.132±0.07 0.017±0.01 0.212±0.07 0.050±0.02 0.551±0.26 0.120±0.05 0.702±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030V CIL_00030V_0002 CGP 6:115853470-115938829
CIL_00030W CIL_00030W_0002 CGP 6:115931927-115950236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 ISO photoreceptor outer segment
GO:0001917 IDA photoreceptor inner segment
GO:0004930 IEA G-protein coupled receptor activity
GO:0005515 IPI protein binding
GO:0005794 ISO Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006468 IDA protein phosphorylation
GO:0007601 IMP visual perception
GO:0007602 IMP phototransduction
GO:0009416 IMP response to light stimulus
GO:0009583 IMP detection of light stimulus
GO:0009585 IEA red, far-red light phototransduction
GO:0009881 IEA photoreceptor activity
GO:0016021 IEA integral component of membrane
GO:0016056 IEA rhodopsin mediated signaling pathway
GO:0016918 IEA retinal binding
GO:0018298 IEA protein-chromophore linkage
GO:0030507 ISO spectrin binding
GO:0030867 IEA rough endoplasmic reticulum membrane
GO:0042622 ISS photoreceptor outer segment membrane
GO:0046872 IEA metal ion binding
GO:0050953 IMP sensory perception of light stimulus
GO:0060041 IMP retina development in camera-type eye
GO:0060342 ISS photoreceptor inner segment membrane
GO:0071482 IMP cellular response to light stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000027000 rho-001 protein_coding Danio_rerio 0 760
ENST00000296271 RHO-001 protein_coding Homo_sapiens 0 1356

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