C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhodopsin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296271 RHO-001 ENSG00000163914 9606 + 3:129528640-129535169 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartOvaryPlacentaTestisENST00000296271
Transcript ID Brain Breast Heart Ovary Placenta Testis
ENST00000296271 0.209±0.01 0.103±0.00 0.088±0.00 0.014±0.00 0.030±0.01 0.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030V CIL_00030V_0001 CGP 3:129440036-129535169
CIL_00030W CIL_00030W_0001 CGP 3:129528640-129551467

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001750 IDA photoreceptor outer segment
GO:0001917 IDA photoreceptor inner segment
GO:0004930 IEA G-protein coupled receptor activity
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005911 IEA cell-cell junction
GO:0006468 IEA protein phosphorylation
GO:0007186 TAS:IEA G-protein coupled receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007602 IEA phototransduction
GO:0007603 TAS phototransduction, visible light
GO:0009416 IEA response to light stimulus
GO:0009583 IEA detection of light stimulus
GO:0009585 IEA red, far-red light phototransduction
GO:0009881 IEA photoreceptor activity
GO:0016021 IEA integral component of membrane
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0016918 IEA retinal binding
GO:0018298 IEA protein-chromophore linkage
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0030507 IEA spectrin binding
GO:0030867 IEA rough endoplasmic reticulum membrane
GO:0042622 IDA photoreceptor outer segment membrane
GO:0046872 IEA metal ion binding
GO:0050953 IEA sensory perception of light stimulus
GO:0060041 IEA retina development in camera-type eye
GO:0060342 IDA photoreceptor inner segment membrane
GO:0071482 IEA cellular response to light stimulus
GO:0097381 TAS photoreceptor disc membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032471 Rho-201 protein_coding Mus_musculus 0 1356
ENSDART00000027000 rho-001 protein_coding Danio_rerio 0 811

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