C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) III beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000030553 top3b-201 ENSDARG00000027586 7955 - 5:14416827-14454062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000030553
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000030553 1.734±1.66 1.818±0.00 0.535±0.00 0.721±0.00 2.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KY CIL_0003KY_0001 CGP 5:14383696-14454062

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003916 IEA DNA topoisomerase activity
GO:0003917 IEA DNA topoisomerase type I activity
GO:0006265 IEA DNA topological change
GO:0016853 IEA isomerase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357179 TOP3B-001 protein_coding Homo_sapiens 0 1293
ENST00000398793 TOP3B-003 protein_coding Homo_sapiens 0 1293
ENST00000436282 TOP3B-005 nonsense_mediated_decay Homo_sapiens 0 603
ENST00000444502 TOP3B-002 nonsense_mediated_decay Homo_sapiens 0 725
ENST00000457179 TOP3B-004 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000457270 TOP3B-006 protein_coding Homo_sapiens 0 821
ENST00000470338 TOP3B-017 retained_intron Homo_sapiens 5.04467e-44 182

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