C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) III beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357179 TOP3B-001 ENSG00000100038 9606 - 22:21957025-21982816 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyMuscleOvaryTestisENST00000357179
Transcript ID Bladder Breast Colon Kidney Muscle Ovary Testis
ENST00000357179 1.038±0.00 1.305±0.00 1.685±0.00 3.747±0.00 2.115±1.69 3.779±2.22 2.514±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KY CIL_0003KY_0002 CGP 22:21919420-21982816

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003916 TAS:IEA DNA topoisomerase activity
GO:0003917 IEA DNA topoisomerase type I activity
GO:0005634 IDA nucleus
GO:0006265 IEA DNA topological change
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119787 Top3b-004 protein_coding Mus_musculus 0 2918
ENSMUST00000023465 Top3b-001 protein_coding Mus_musculus 0 2918
ENSMUST00000150424 Top3b-008 retained_intron Mus_musculus 0 2032
ENSMUST00000156951 Top3b-021 protein_coding Mus_musculus 0 1720
ENSMUST00000135597 Top3b-002 retained_intron Mus_musculus 0 1489
ENSDART00000030553 top3b-201 protein_coding Danio_rerio 0 1293
ENSMUST00000128407 Top3b-015 retained_intron Mus_musculus 0 1081
ENSMUST00000139740 Top3b-003 protein_coding Mus_musculus 0 1002
ENSMUST00000156502 Top3b-020 protein_coding Mus_musculus 0 833
ENSMUST00000118424 Top3b-007 retained_intron Mus_musculus 0 671
ENSMUST00000124185 Top3b-012 protein_coding Mus_musculus 0 449
ENSMUST00000124960 Top3b-017 protein_coding Mus_musculus 0 412
ENSMUST00000151271 Top3b-013 retained_intron Mus_musculus 0.0000000000009 81

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