C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000042218 pafah1b1a-001 ENSDARG00000032013 7955 - 15:24604278-24650756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000042218
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000042218 10.459±0.00 17.753±0.00 13.233±0.00 2.416±0.00 3.731±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060V CIL_00060V_0001 CGP 15:24545264-24650756
CIL_00060W CIL_00060W_0001 CGP 15:24604278-24698402

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000132 IEA establishment of mitotic spindle orientation
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005815 IEA microtubule organizing center
GO:0005856 IEA cytoskeleton
GO:0005874 IEA microtubule
GO:0005875 IEA microtubule associated complex
GO:0006810 IEA transport
GO:0006928 IEA cellular component movement
GO:0007049 IEA cell cycle
GO:0007067 IEA mitosis
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0030154 IEA cell differentiation
GO:0045502 IEA dynein binding
GO:0048854 IMP brain morphogenesis
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397193 PAFAH1B1-012 processed_transcript Homo_sapiens 0 704
ENST00000397195 PAFAH1B1-001 protein_coding Homo_sapiens 0 1072
ENST00000571495 PAFAH1B1-006 retained_intron Homo_sapiens 0 457
ENST00000574213 PAFAH1B1-007 processed_transcript Homo_sapiens 8e-17 92
ENST00000574468 PAFAH1B1-004 protein_coding Homo_sapiens 0 193
ENST00000574816 PAFAH1B1-010 processed_transcript Homo_sapiens 0 289

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