C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00060V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000055838-ENSDARG00000032013 CGP 7955 15:24545264-24650756
GeneTranscriptPositionBiotype
ENSDARG00000032013 (pafah1b1a)
platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit a 		ENSDART00000042218 (pafah1b1a-001) 24604278-24650756 protein_coding
ENSDART00000130485 (pafah1b1a-002) 24609938-24615138 processed_transcript
ENSDARG00000055838 (mettl16)
methyltransferase like 16 		ENSDART00000078230 (mettl16-001) 24545264-24600121 protein_coding
ENSDART00000127771 (mettl16-002) 24569582-24599734 processed_transcript
ENSDART00000134159 (mettl16-003) 24546221-24560562 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_00060V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000127804-ENSG00000007168 CGP 9606 17:2405562-2685615
GeneTranscriptPositionBiotype
ENSG00000007168 (PAFAH1B1)
platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) 		ENST00000397193 (PAFAH1B1-012) 2667294-2682038 processed_transcript
ENST00000397195 (PAFAH1B1-001) 2593746-2685615 protein_coding
ENST00000570400 (PAFAH1B1-008) 2593962-2667182 nonsense_mediated_decay
ENST00000571289 (PAFAH1B1-009) 2593968-2638648 retained_intron
ENST00000571495 (PAFAH1B1-006) 2673665-2682348 retained_intron
ENST00000572915 (PAFAH1B1-003) 2593957-2684500 processed_transcript
ENST00000574213 (PAFAH1B1-007) 2680844-2681857 processed_transcript
ENST00000574468 (PAFAH1B1-004) 2670268-2682196 protein_coding
ENST00000574816 (PAFAH1B1-010) 2609539-2681910 processed_transcript
ENST00000575477 (PAFAH1B1-005) 2593815-2666090 processed_transcript
ENST00000576586 (PAFAH1B1-011) 2593210-2667045 protein_coding
ENST00000609078 (PAFAH1B1-014) 2665381-2670374 processed_transcript
ENST00000610190 (PAFAH1B1-013) 2679687-2681744 retained_intron
ENSG00000127804 (METTL16)
methyltransferase like 16 		ENST00000263092 (METTL16-001) 2416076-2511886 protein_coding
ENST00000381977 (METTL16-011) 2407013-2415849 processed_transcript
ENST00000571298 (METTL16-007) 2459893-2477885 nonsense_mediated_decay
ENST00000571332 (METTL16-010) 2405562-2416085 processed_transcript
ENST00000571669 (METTL16-002) 2416058-2511891 processed_transcript
ENST00000574623 (METTL16-006) 2416049-2419769 processed_transcript
ENST00000574752 (METTL16-005) 2420185-2511835 nonsense_mediated_decay
ENST00000576556 (METTL16-004) 2419588-2511888 nonsense_mediated_decay
ENST00000576976 (METTL16-008) 2467761-2511889 protein_coding
ENST00000577148 (METTL16-009) 2477409-2502280 retained_intron
ENSG00000243049 (RN7SL33P)
RNA, 7SL, cytoplasmic 33, pseudogene 		ENST00000462543 (RN7SL33P-201) 2557753-2558094 misc_RNA
ENSG00000262953 (EIF4A1P9)
eukaryotic translation initiation factor 4A1 pseudogene 9 		ENST00000576035 (EIF4A1P9-001) 2586330-2587866 processed_pseudogene
ENSG00000272770 (RP11-74E22.5)
 ENST00000610120 (RP11-74E22.5-001) 2683305-2685088 antisense
ENSG00000279432 (RP11-135N5.3)
 ENST00000622996 (RP11-135N5.3-001) 2639297-2642418 TEC
ENSG00000280280 (RP1-59D14.8)
 ENST00000624486 (RP1-59D14.8-001) 2460183-2460294 TEC

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00060V_0001ENSDARG00000032013ENSDART00000042218ENSDART00000130485ENSDARG00000055838ENSDART00000078230ENSDART00000127771ENSDART00000134159CIL_00060V_0002ENSG00000007168ENST00000397193ENST00000397195ENST00000570400ENST00000571289ENST00000571495ENST00000572915ENST00000574213ENST00000574468ENST00000574816ENST00000575477ENST00000576586ENST00000609078ENST00000610190ENSG00000127804ENST00000263092ENST00000381977ENST00000571298ENST00000571332ENST00000571669ENST00000574623ENST00000574752ENST00000576556ENST00000576976ENST00000577148ENSG00000243049ENST00000462543ENSG00000262953ENST00000576035ENSG00000272770ENST00000610120ENSG00000279432ENST00000622996ENSG00000280280ENST00000624486
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00060V_0001ENSDARG00000032013ENSDART00000042218ENSDARG00000055838ENSDART00000078230CIL_00060V_0002ENSG00000007168ENST00000397193ENST00000397195ENST00000571495ENST00000574468ENST00000574816ENST00000609078ENSG00000127804ENST00000263092ENST00000571669ENST00000574623ENST00000574752ENST00000576556ENST00000576976ENSG00000243049ENST00000462543ENSG00000262953ENST00000576035ENSG00000272770ENST00000610120ENSG00000279432ENST00000622996ENSG00000280280ENST00000624486
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000032013 ENSDART00000042218 N/A N/A N/A 10.459±0.00 N/A N/A 17.753±0.00 13.233±0.00 2.416±0.00 N/A 3.731±0.00 N/A N/A N/A
ENSDART00000130485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000055838 ENSDART00000078230 N/A N/A N/A 2.114±0.67 N/A N/A 1.472±0.08 1.165±0.96 0.962±0.00 N/A 1.514±0.00 N/A N/A N/A
ENSDART00000127771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000007168 ENST00000397193 N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.605±0.00 N/A N/A 13.527±1.20 55.140±11.96
ENST00000397195 16.826±0.00 15.137±0.00 1.421±0.00 31.652±0.52 16.395±0.00 14.656±3.69 13.652±6.80 10.720±0.00 7.475±2.40 10.074±2.52 13.240±7.60 14.112±1.98 14.485±2.45 20.573±1.57
ENST00000570400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.549±0.00 N/A N/A N/A
ENST00000572915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.533±0.00 N/A 80.879±0.00
ENST00000574816 N/A N/A 15.427±0.00 N/A N/A N/A N/A 12.280±0.00 N/A N/A N/A N/A N/A N/A
ENST00000575477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.424±0.00 72.021±0.00 264.896±0.00
ENST00000610190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000127804 ENST00000263092 3.023±0.00 2.422±0.00 0.446±0.00 1.349±0.64 2.255±1.66 3.143±1.71 1.676±1.20 1.322±0.00 1.341±0.77 1.642±0.81 3.408±0.00 2.746±1.74 1.235±0.29 4.121±0.00
ENST00000381977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571669 2.777±0.00 6.880±0.00 0.945±0.00 3.707±0.00 2.476±1.26 2.002±0.00 1.919±0.00 2.031±1.76 1.940±0.00 1.166±0.22 N/A 3.706±1.49 1.144±0.44 4.730±0.73
ENST00000574623 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.205±0.00 N/A 6.966±0.00 N/A N/A
ENST00000574752 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.754±0.00 0.684±0.00 N/A N/A N/A
ENST00000576556 N/A N/A N/A 0.878±0.00 N/A N/A 0.771±0.00 0.643±0.00 N/A N/A 2.000±0.00 N/A N/A N/A
ENST00000576976 N/A N/A 11.203±0.00 2.940±0.00 16.179±0.00 9.166±0.00 4.553±0.00 4.156±0.00 13.773±0.00 10.573±0.00 5.344±0.00 15.441±0.00 N/A N/A
ENST00000577148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243049 ENST00000462543 0.124±0.00 0.525±0.00 N/A 0.153±0.00 0.213±0.00 0.191±0.00 N/A N/A N/A 0.333±0.00 N/A N/A N/A 0.555±0.00
ENSG00000262953 ENST00000576035 0.046±0.00 N/A N/A 0.013±0.00 0.012±0.00 0.011±0.00 0.055±0.00 0.037±0.00 0.032±0.00 0.023±0.00 0.010±0.00 0.070±0.05 N/A 0.067±0.02
ENSG00000272770 ENST00000610120 N/A N/A N/A 54.450±0.00 25.437±0.00 N/A 28.934±0.00 22.579±0.00 6.685±0.00 N/A 36.603±0.00 24.926±0.00 N/A N/A
ENSG00000279432 ENST00000622996 0.081±0.00 0.500±0.00 0.160±0.00 0.134±0.02 0.657±0.52 0.372±0.34 0.195±0.04 0.234±0.11 0.271±0.23 0.261±0.15 0.060±0.01 0.332±0.21 0.048±0.04 0.245±0.06
ENSG00000280280 ENST00000624486 0.320±0.00 N/A N/A N/A N/A N/A N/A N/A 185.486±0.00 202.564±0.00 N/A N/A N/A N/A

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