C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161996 Srgap1-003 ENSMUSG00000020121 10090 - 10:121785240-121807104 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleTestisENSMUST00000161996
Transcript ID Liver Muscle Testis
ENSMUST00000161996 0.069±0.02 0.081±0.00 10.183±3.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006YB CIL_0006YB_0002 CGP 10:121780991-122097371

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000048707 srgap2b-201 protein_coding Danio_rerio 0 195
ENSDART00000014897 srgap2b-001 protein_coding Danio_rerio 0 195
ENSDART00000050420 arhgap4a-201 protein_coding Danio_rerio 0.0000007 60
ENSDART00000145307 arhgap4a-001 protein_coding Danio_rerio 0.0000007 60
ENST00000355086 SRGAP1-001 protein_coding Homo_sapiens 0 1633
ENST00000542841 SRGAP1-004 retained_intron Homo_sapiens 0 697
ENST00000543397 SRGAP1-003 protein_coding Homo_sapiens 0 1633

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