C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide J
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000050902 polr2j-001 ENSDARG00000035146 7955 + 5:64522041-64527647 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000050902
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000050902 9.000±7.14 16.880±11.19 15.585±3.07 1.284±0.00 5.162±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001055 IBA RNA polymerase II activity
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005665 IBA DNA-directed RNA polymerase II, core complex
GO:0006351 IEA transcription, DNA-templated
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292614 POLR2J-001 protein_coding Homo_sapiens 0 259
ENST00000326391 POLR2J4-002 processed_transcript Homo_sapiens 0 231
ENST00000333432 POLR2J2-201 protein_coding Homo_sapiens 0 200
ENST00000358438 POLR2J2-002 protein_coding Homo_sapiens 0 200
ENST00000379340 POLR2J3-003 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000393794 POLR2J-201 protein_coding Homo_sapiens 0 217
ENST00000418424 POLR2J4-003 transcribed_unprocessed_pseudogene Homo_sapiens 0 213
ENST00000443430 POLR2J3-015 processed_transcript Homo_sapiens 8.99634e-43 178
ENST00000464525 POLR2J3-002 nonsense_mediated_decay Homo_sapiens 9e-27 126
ENST00000476151 POLR2J2-001 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000489144 POLR2J3-001 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000504157 POLR2J3-006 processed_transcript Homo_sapiens 1.99965e-42 178
ENST00000506060 POLR2J3-014 processed_transcript Homo_sapiens 8.00141e-43 178
ENST00000508848 POLR2J3-011 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000508910 POLR2J3-016 processed_transcript Homo_sapiens 5.99756e-43 178
ENST00000608621 POLR2J3-019 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000613744 POLR2J3-202 protein_coding Homo_sapiens 0 211
ENST00000621093 POLR2J3-203 protein_coding Homo_sapiens 0 211

Loading