C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000292614 POLR2J-001 ENSG00000005075 9606 - 7:102473118-102478907 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000292614
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000292614 5.842±0.00 13.870±0.00 0.866±0.00 7.721±1.74 4.612±3.10 5.080±2.60 7.331±3.76 8.384±3.20 7.513±3.28 6.675±4.12 17.229±8.56 14.122±9.32 14.491±7.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RK CIL_0001RK_0002 CGP 7:102456238-102473168

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0001055 IBA RNA polymerase II activity
GO:0003677 IEA DNA binding
GO:0003899 TAS DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0030275 IPI LRR domain binding
GO:0046983 IEA protein dimerization activity
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041366 Polr2j-001 protein_coding Mus_musculus 0 459
ENSMUST00000111127 Polr2j-003 protein_coding Mus_musculus 0 414
ENSDART00000050902 polr2j-001 protein_coding Danio_rerio 0 259
ENSMUST00000111129 Polr2j-002 protein_coding Mus_musculus 4e-17 94

Loading