C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 27 (U4/U6.U5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000051655 snrnp27-001 ENSDARG00000035625 7955 - 5:14973668-14984651 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000051655
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000051655 47.421±21.29 13.256±7.06 11.027±1.57 2.424±0.00 19.383±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005JQ CIL_0005JQ_0001 CGP 5:14912884-14984651

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244227 SNRNP27-001 protein_coding Homo_sapiens 1e-28 132
ENST00000409116 SNRNP27-002 protein_coding Homo_sapiens 0.0000000009 69
ENST00000435990 MXD1-002 protein_coding Homo_sapiens 4e-21 106
ENST00000450162 SNRNP27-003 nonsense_mediated_decay Homo_sapiens 6e-29 132
ENST00000487029 SNRNP27-005 nonsense_mediated_decay Homo_sapiens 0.0000000004 69

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