C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DNA (cytosine-5-)-methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000078973 dnmt1-201 ENSDARG00000030756 7955 - 3:55442890-55458838 protein_coding

Danio rerio EnsemblZv9

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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BQ CIL_0004BQ_0001 CGP 3:55433659-55458859
CIL_000773 CIL_000773_0001 CGP 3:55442890-55469588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002088 IMP lens development in camera-type eye
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003886 IEA DNA (cytosine-5-)-methyltransferase activity
GO:0005634 IEA nucleus
GO:0006306 IEA DNA methylation
GO:0008134 IEA transcription factor binding
GO:0008168 IEA methyltransferase activity
GO:0008270 IEA zinc ion binding
GO:0010842 IMP retina layer formation
GO:0016740 IEA transferase activity
GO:0031017 IMP exocrine pancreas development
GO:0032259 IEA methylation
GO:0032776 IMP DNA methylation on cytosine
GO:0035622 IMP intrahepatic bile duct development
GO:0044030 IMP regulation of DNA methylation
GO:0048565 IMP digestive tract development
GO:0051216 IMP cartilage development
GO:0051567 IMP histone H3-K9 methylation
GO:0060042 IMP retina morphogenesis in camera-type eye
GO:0090116 IEA C-5 methylation of cytosine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004202 Dnmt1-201 protein_coding Mus_musculus 0 970
ENSMUST00000177754 Dnmt1-202 protein_coding Mus_musculus 0 970
ENSMUST00000178110 Dnmt1-203 protein_coding Mus_musculus 0 970

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