C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000773_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000030756-ENSDARG00000036548 CGP 7955 3:55442890-55469588
GeneTranscriptPositionBiotype
ENSDARG00000030756 (dnmt1)
DNA (cytosine-5-)-methyltransferase 1 		ENSDART00000021977 (dnmt1-001) 55442890-55458838 protein_coding
ENSDART00000078973 (dnmt1-201) 55442890-55458838 protein_coding
ENSDART00000128041 (dnmt1-202) 55442890-55458859 protein_coding
ENSDARG00000036548 (s1pr2)
sphingosine-1-phosphate receptor 2 		ENSDART00000053106 (s1pr2-201) 55468476-55469588 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000773_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130816-ENSG00000130816 CGP 9606 19:10133345-10231286
GeneTranscriptPositionBiotype
ENSG00000130816 (DNMT1)
DNA (cytosine-5-)-methyltransferase 1 		ENST00000340748 (DNMT1-001) 10133346-10195135 protein_coding
ENST00000359526 (DNMT1-002) 10133540-10195079 protein_coding
ENST00000540357 (DNMT1-201) 10133347-10195135 protein_coding
ENST00000585843 (DNMT1-018) 10154664-10160263 retained_intron
ENST00000585920 (DNMT1-017) 10160207-10162983 retained_intron
ENST00000586086 (DNMT1-014) 10180463-10184559 processed_transcript
ENST00000586588 (DNMT1-004) 10133345-10144754 retained_intron
ENST00000586667 (DNMT1-020) 10148925-10151697 retained_intron
ENST00000586799 (DNMT1-019) 10149948-10154977 nonsense_mediated_decay
ENST00000586800 (DNMT1-010) 10180355-10201197 protein_coding
ENST00000586988 (DNMT1-015) 10168330-10194904 nonsense_mediated_decay
ENST00000587197 (DNMT1-026) 10137888-10140195 retained_intron
ENST00000587604 (DNMT1-023) 10140529-10142074 retained_intron
ENST00000588118 (DNMT1-009) 10175540-10201192 protein_coding
ENST00000588913 (DNMT1-008) 10133367-10140130 nonsense_mediated_decay
ENST00000588952 (DNMT1-012) 10173090-10231286 protein_coding
ENST00000589091 (DNMT1-025) 10140689-10141446 retained_intron
ENST00000589294 (DNMT1-027) 10137467-10138470 retained_intron
ENST00000589349 (DNMT1-016) 10159912-10166671 retained_intron
ENST00000589351 (DNMT1-024) 10140254-10141572 retained_intron
ENST00000589538 (DNMT1-029) 10140030-10143901 processed_transcript
ENST00000590619 (DNMT1-005) 10177319-10180381 protein_coding
ENST00000591239 (DNMT1-022) 10141697-10143791 retained_intron
ENST00000591764 (DNMT1-007) 10159944-10166666 retained_intron
ENST00000591798 (DNMT1-028) 10133351-10135517 processed_transcript
ENST00000592054 (DNMT1-013) 10175563-10194626 protein_coding
ENST00000592342 (DNMT1-011) 10175542-10231273 protein_coding
ENST00000592705 (DNMT1-006) 10133346-10194934 nonsense_mediated_decay
ENST00000593049 (DNMT1-021) 10140280-10142896 processed_transcript
ENSG00000175898 (CTD-2369P2.2)
 ENST00000317726 (CTD-2369P2.2-002) 10221435-10223194 lincRNA
ENST00000589757 (CTD-2369P2.2-001) 10221437-10222748 lincRNA
ENSG00000267534 (S1PR2)
sphingosine-1-phosphate receptor 2 		ENST00000590320 (S1PR2-001) 10223844-10231272 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_000773_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004099-ENSMUSG00000043895 CGP 10090 9:20907206-20976793
GeneTranscriptPositionBiotype
ENSMUSG00000004099 (Dnmt1)
DNA methyltransferase (cytosine-5) 1 		ENSMUST00000004202 (Dnmt1-201) 20907206-20952979 protein_coding
ENSMUST00000177754 (Dnmt1-202) 20907206-20959888 protein_coding
ENSMUST00000178110 (Dnmt1-203) 20907206-20952623 protein_coding
ENSMUSG00000043895 (S1pr2)
sphingosine-1-phosphate receptor 2 		ENSMUST00000054197 (S1pr2-201) 20965952-20976793 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000773_0001ENSDARG00000030756ENSDART00000021977ENSDART00000078973ENSDART00000128041ENSDARG00000036548ENSDART00000053106CIL_000773_0002ENSG00000130816ENST00000340748ENST00000359526ENST00000540357ENST00000585843ENST00000585920ENST00000586086ENST00000586588ENST00000586667ENST00000586799ENST00000586800ENST00000586988ENST00000587197ENST00000587604ENST00000588118ENST00000588913ENST00000588952ENST00000589091ENST00000589294ENST00000589349ENST00000589351ENST00000589538ENST00000590619ENST00000591239ENST00000591764ENST00000591798ENST00000592054ENST00000592342ENST00000592705ENST00000593049ENSG00000175898ENST00000317726ENST00000589757ENSG00000267534ENST00000590320CIL_000773_0003ENSMUSG00000004099ENSMUST00000004202ENSMUST00000177754ENSMUST00000178110ENSMUSG00000043895ENSMUST00000054197
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000773_0001ENSDARG00000030756ENSDART00000021977ENSDART00000128041ENSDARG00000036548ENSDART00000053106CIL_000773_0002ENSG00000130816ENST00000340748ENST00000359526ENST00000540357ENST00000585920ENST00000586799ENST00000586988ENST00000588913ENST00000591764ENST00000592054ENST00000592705ENSG00000175898ENST00000317726ENST00000589757ENSG00000267534ENST00000590320CIL_000773_0003ENSMUSG00000004099ENSMUST00000004202ENSMUST00000177754ENSMUST00000178110ENSMUSG00000043895ENSMUST00000054197
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030756 ENSDART00000021977 N/A N/A N/A 7.499±1.75 N/A N/A 2.201±0.54 51.625±0.00 1.505±0.00 N/A 1.125±0.00 N/A N/A N/A
ENSDART00000078973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000128041 N/A N/A N/A N/A N/A N/A 1.313±0.00 6.533±2.25 N/A N/A N/A N/A N/A N/A
ENSDARG00000036548 ENSDART00000053106 N/A N/A N/A N/A N/A N/A 1.989±0.00 N/A 0.589±0.00 N/A 2.896±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130816 ENST00000340748 N/A N/A 0.641±0.00 1.184±0.63 1.098±0.00 0.930±0.00 N/A 1.039±0.00 0.526±0.16 N/A 0.925±0.00 3.692±1.04 11.479±0.53 N/A
ENST00000359526 3.541±0.00 3.512±0.00 N/A 2.921±0.00 1.207±0.00 2.215±0.00 1.070±0.00 1.580±0.00 0.838±0.00 3.035±0.00 N/A 4.954±3.52 9.167±4.35 7.928±0.09
ENST00000540357 2.336±0.00 5.016±0.00 N/A N/A 2.236±0.43 1.574±0.00 1.119±0.00 3.495±0.00 1.488±0.00 N/A 0.687±0.00 6.504±3.39 17.123±8.18 10.897±4.30
ENST00000585843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585920 N/A N/A 3.217±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586799 N/A N/A N/A N/A N/A N/A N/A N/A 4.272±0.00 N/A 3.481±0.00 N/A N/A N/A
ENST00000586800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586988 N/A N/A 2.438±0.00 3.868±0.00 N/A 3.449±0.00 2.140±0.00 N/A 3.976±0.00 N/A N/A N/A N/A N/A
ENST00000587197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588913 N/A N/A N/A N/A N/A N/A N/A N/A 1.317±0.00 N/A N/A N/A N/A N/A
ENST00000588952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591764 N/A N/A N/A N/A N/A N/A N/A N/A 7.429±0.00 N/A N/A N/A 54.812±0.00 32.149±0.00
ENST00000591798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.964±0.00 N/A N/A N/A
ENST00000592342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592705 N/A N/A 0.281±0.00 N/A N/A 0.697±0.00 0.536±0.00 N/A N/A N/A 1.255±0.00 N/A N/A N/A
ENST00000593049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000175898 ENST00000317726 8.215±0.00 6.193±0.00 0.042±0.00 0.809±0.51 3.818±2.33 2.970±2.09 0.982±0.66 1.511±1.43 2.140±0.15 6.721±5.46 0.165±0.12 5.580±4.74 21.140±5.27 4.288±0.34
ENST00000589757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.805±0.00 N/A N/A N/A
ENSG00000267534 ENST00000590320 7.276±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 13.845±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004099 ENSMUST00000004202 1.678±1.00 2.911±0.97 4.562±0.12 14.149±2.01 2.342±0.31 2.492±0.70 1.460±0.48 1.610±0.45 11.665±9.73 2.843±0.93 0.926±0.46 15.113±15.58 25.041±14.26 2.166±1.33
ENSMUST00000177754 4.307±3.93 8.542±3.55 2.065±0.41 5.310±1.73 4.171±2.59 5.959±2.64 0.702±0.00 2.099±0.94 6.638±4.52 5.820±1.53 0.444±0.08 12.179±5.97 6.446±2.16 2.722±0.64
ENSMUST00000178110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.307±1.57
ENSMUSG00000043895 ENSMUST00000054197 8.457±1.28 16.515±0.75 10.146±0.38 2.162±1.27 13.886±4.12 5.696±1.10 3.625±0.15 3.093±0.48 2.766±0.57 21.835±5.67 0.578±0.14 21.875±6.89 15.186±7.15 0.653±0.28

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