C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor, alpha a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000080481 rxraa-001 ENSDARG00000057737 7955 + 21:16392096-16456393 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077257 Rxra-001 protein_coding Mus_musculus 0 937
ENSMUST00000100251 Rxra-002 protein_coding Mus_musculus 0 937
ENSMUST00000113934 Rxra-003 protein_coding Mus_musculus 0 937
ENSMUST00000166775 Rxra-201 protein_coding Mus_musculus 0 937
ENST00000374680 RXRB-001 protein_coding Homo_sapiens 0 446
ENST00000374685 RXRB-002 protein_coding Homo_sapiens 0 401
ENST00000383216 RXRB-002 protein_coding Homo_sapiens 0 407
ENST00000383217 RXRB-001 protein_coding Homo_sapiens 0 451
ENST00000415157 RXRB-001 protein_coding Homo_sapiens 0 446
ENST00000415909 RXRB-001 protein_coding Homo_sapiens 0 451
ENST00000431161 RXRB-002 protein_coding Homo_sapiens 0 407
ENST00000431820 RXRB-001 protein_coding Homo_sapiens 0 451
ENST00000436753 RXRB-001 protein_coding Homo_sapiens 0 451
ENST00000443603 RXRB-002 protein_coding Homo_sapiens 0 407
ENST00000455462 RXRB-002 protein_coding Homo_sapiens 0 401
ENST00000456244 RXRB-002 protein_coding Homo_sapiens 0 407
ENST00000462174 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000462452 RXRB-006 retained_intron Homo_sapiens 0 202
ENST00000463338 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000465169 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000468440 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000471999 RXRB-006 retained_intron Homo_sapiens 0 202
ENST00000473482 RXRB-006 retained_intron Homo_sapiens 0 202
ENST00000482725 RXRB-006 retained_intron Homo_sapiens 0 202
ENST00000483281 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000483821 RXRB-006 retained_intron Homo_sapiens 0 202
ENST00000485267 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000486581 RXRB-006 retained_intron Homo_sapiens 0 202
ENST00000531100 RXRB-007 protein_coding Homo_sapiens 0 407

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