C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374680 RXRB-001 ENSG00000204231 9606 - 6:33193588-33200688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverENST00000374680
Transcript ID Brain Liver
ENST00000374680 1.588±0.00 2.086±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PH CIL_0001PH_0002 CGP 6:33162681-33200688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 NAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 TAS transcription coactivator activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116612 Rxrb-003 protein_coding Mus_musculus 0 1751
ENSMUST00000174299 Rxrb-010 protein_coding Mus_musculus 0 1751
ENSMUST00000173354 Rxrb-002 protein_coding Mus_musculus 0 1696
ENSMUST00000044858 Rxrb-001 protein_coding Mus_musculus 0 1696
ENSMUST00000174740 Rxrb-006 retained_intron Mus_musculus 0 726
ENSMUST00000173554 Rxrb-004 protein_coding Mus_musculus 0 665
ENSMUST00000166775 Rxra-201 protein_coding Mus_musculus 0 662
ENSMUST00000113934 Rxra-003 protein_coding Mus_musculus 0 662
ENSMUST00000100251 Rxra-002 protein_coding Mus_musculus 0 662
ENSMUST00000077257 Rxra-001 protein_coding Mus_musculus 0 662
ENSMUST00000174130 Rxrb-005 retained_intron Mus_musculus 0 549
ENSMUST00000174578 Rxrb-009 retained_intron Mus_musculus 0 507
ENSMUST00000174645 Rxrb-007 retained_intron Mus_musculus 0 466
ENSDART00000124173 rxraa-201 protein_coding Danio_rerio 0 446
ENSDART00000080481 rxraa-001 protein_coding Danio_rerio 0 446
ENSMUST00000174033 Rxrb-008 retained_intron Mus_musculus 0 327
ENSDART00000128914 rxrbb-201 protein_coding Danio_rerio 1e-35 156
ENSDART00000021596 rxrbb-001 protein_coding Danio_rerio 1e-35 156
ENSDART00000147844 rxrbb-002 retained_intron Danio_rerio 9e-28 130

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