C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077257 Rxra-001 ENSMUSG00000015846 10090 + 2:27677201-27762957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077257
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077257 31.737±12.64 18.099±1.93 30.459±0.24 3.064±1.68 27.828±9.75 21.374±2.64 7.553±3.56 19.593±7.49 38.352±37.81 20.647±7.10 23.476±7.65 16.044±2.57 26.921±18.30 2.662±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000151 CIL_000151_0002 CGP 2:27515157-27762957
CIL_000152 CIL_000152_0002 CGP 2:27676440-28039514

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001701 IGI in utero embryonic development
GO:0001890 IMP placenta development
GO:0001893 IGI maternal placenta development
GO:0003007 TAS heart morphogenesis
GO:0003677 IDA DNA binding
GO:0003700 IGI sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0004886 IDA 9-cis retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0007507 IMP:TAS heart development
GO:0007566 IGI embryo implantation
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0010629 TAS negative regulation of gene expression
GO:0019048 IEA modulation by virus of host morphology or physiology
GO:0019899 IEA enzyme binding
GO:0031490 IDA chromatin DNA binding
GO:0032526 IEA response to retinoic acid
GO:0035357 IEA peroxisome proliferator activated receptor signaling pathway
GO:0042809 IEA vitamin D receptor binding
GO:0043010 IGI camera-type eye development
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IGI sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0044323 IEA retinoic acid-responsive element binding
GO:0045893 IGI:TAS positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0045994 IGI positive regulation of translational initiation by iron
GO:0046982 IEA protein heterodimerization activity
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0051289 IEA protein homotetramerization
GO:0055007 TAS cardiac muscle cell differentiation
GO:0055010 IMP ventricular cardiac muscle tissue morphogenesis
GO:0055012 IGI ventricular cardiac muscle cell differentiation
GO:0060038 IGI:TAS cardiac muscle cell proliferation
GO:0060485 TAS mesenchyme development
GO:0060528 IMP secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development
GO:0060687 IMP regulation of branching involved in prostate gland morphogenesis
GO:0060978 TAS angiogenesis involved in coronary vascular morphogenesis
GO:0061032 TAS visceral serous pericardium development
GO:0070644 IEA vitamin D response element binding
GO:1901522 IDA positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000124173 rxraa-201 protein_coding Danio_rerio 0 937
ENSDART00000080481 rxraa-001 protein_coding Danio_rerio 0 937
ENSDART00000009755 rxrba-201 protein_coding Danio_rerio 0 387
ENSDART00000112245 rxrba-202 protein_coding Danio_rerio 0 387
ENSDART00000102075 rxrba-004 protein_coding Danio_rerio 0 387
ENSDART00000136528 rxrba-003 protein_coding Danio_rerio 0 387
ENSDART00000132887 rxrba-005 protein_coding Danio_rerio 0 202
ENSDART00000147429 rxrba-007 protein_coding Danio_rerio 0 200
ENST00000356384 RXRA-001 processed_transcript Homo_sapiens 0 1626
ENST00000374680 RXRB-001 protein_coding Homo_sapiens 0 662
ENST00000374685 RXRB-002 protein_coding Homo_sapiens 0 617
ENST00000383216 RXRB-002 protein_coding Homo_sapiens 0 612
ENST00000383217 RXRB-001 protein_coding Homo_sapiens 0 656
ENST00000415157 RXRB-001 protein_coding Homo_sapiens 0 662
ENST00000415909 RXRB-001 protein_coding Homo_sapiens 0 656
ENST00000431161 RXRB-002 protein_coding Homo_sapiens 0 612
ENST00000431820 RXRB-001 protein_coding Homo_sapiens 0 656
ENST00000436753 RXRB-001 protein_coding Homo_sapiens 0 656
ENST00000443603 RXRB-002 protein_coding Homo_sapiens 0 612
ENST00000455462 RXRB-002 protein_coding Homo_sapiens 0 617
ENST00000456244 RXRB-002 protein_coding Homo_sapiens 0 612
ENST00000462174 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 662
ENST00000462452 RXRB-006 retained_intron Homo_sapiens 0 239
ENST00000463338 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 656
ENST00000465169 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 656
ENST00000468440 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 656
ENST00000471999 RXRB-006 retained_intron Homo_sapiens 0 239
ENST00000473482 RXRB-006 retained_intron Homo_sapiens 0 239
ENST00000481739 RXRA-002 protein_coding Homo_sapiens 0 1740
ENST00000482725 RXRB-006 retained_intron Homo_sapiens 0 239
ENST00000483281 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 662
ENST00000483821 RXRB-006 retained_intron Homo_sapiens 0 239
ENST00000485267 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 656
ENST00000486581 RXRB-006 retained_intron Homo_sapiens 0 239
ENST00000531100 RXRB-007 protein_coding Homo_sapiens 0 612

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