C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired-like homeobox 2bb
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000106333 phox2bb-201 ENSDARG00000091029 7955 - 14:14897680-14900802 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENSDART00000106333
Transcript ID Brain Kidney
ENSDART00000106333 0.651±0.07 0.115±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OI CIL_0007OI_0003 UCNEbase 14:14827033-14923889

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding
GO:0048484 IMP enteric nervous system development
GO:0061549 IMP sympathetic ganglion development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000012664 Phox2b-001 protein_coding Mus_musculus 0 584
ENSMUST00000174251 Phox2b-002 protein_coding Mus_musculus 0 451
ENST00000226382 PHOX2B-001 protein_coding Homo_sapiens 0 573
ENST00000298231 PHOX2A-001 protein_coding Homo_sapiens 0 222
ENST00000544057 PHOX2A-003 processed_transcript Homo_sapiens 0 217

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