C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired-like homeobox 2b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174251 Phox2b-002 ENSMUSG00000012520 10090 - 5:67097044-67099057 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverLungENSMUST00000174251
Transcript ID Adrenal Colon Liver Lung
ENSMUST00000174251 6.429±2.16 1.177±0.35 0.011±0.01 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028N CIL_00028N_0003 CGP 5:66745835-67099301
CIL_00038I CIL_00038I_0002 CGP 5:67094405-67291461

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0003357 IMP noradrenergic neuron differentiation
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0008285 IMP negative regulation of cell proliferation
GO:0010001 IMP glial cell differentiation
GO:0021533 IMP cell differentiation in hindbrain
GO:0021934 IMP hindbrain tangential cell migration
GO:0030182 IMP neuron differentiation
GO:0035914 IMP skeletal muscle cell differentiation
GO:0045665 IGI negative regulation of neuron differentiation
GO:0045666 IGI positive regulation of neuron differentiation
GO:0048468 IMP cell development
GO:0048839 IMP inner ear development
GO:0048894 IMP efferent axon development in a lateral line nerve
GO:0071773 IDA cellular response to BMP stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000106333 phox2bb-201 protein_coding Danio_rerio 0 451
ENSDART00000080682 phox2bb-001 protein_coding Danio_rerio 0 451
ENST00000226382 PHOX2B-001 protein_coding Homo_sapiens 0 839

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