C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired-like homeobox 2a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298231 PHOX2A-001 ENSG00000165462 9606 - 11:72239077-72244176 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XL CIL_0008XL_0001 VISTA 11:72069476-72670457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003357 NAS noradrenergic neuron differentiation
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0021523 IEA somatic motor neuron differentiation
GO:0021623 IEA oculomotor nerve formation
GO:0021642 IEA trochlear nerve formation
GO:0021703 IEA locus ceruleus development
GO:0030901 IEA midbrain development
GO:0043576 IEA regulation of respiratory gaseous exchange
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048485 IEA sympathetic nervous system development
GO:0048486 IEA parasympathetic nervous system development
GO:0071542 IC dopaminergic neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008090 Phox2a-001 protein_coding Mus_musculus 0 1356
ENSDART00000106333 phox2bb-201 protein_coding Danio_rerio 0 222
ENSDART00000080682 phox2bb-001 protein_coding Danio_rerio 0 222
ENSMUST00000165052 Inppl1-003 protein_coding Mus_musculus 2e-17 95
ENSMUST00000035836 Inppl1-001 protein_coding Mus_musculus 2e-17 95
ENSMUST00000186316 Inppl1-002 processed_transcript Mus_musculus 6e-17 94

Loading