C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000109030 HERC1-201 ENSDARG00000077901 7955 - 7:30525613-30608217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000109030
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000109030 4.515±3.39 3.420±2.27 6.051±2.04 3.114±0.00 2.218±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050A CIL_00050A_0001 CGP 7:30525613-30628699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein ligase activity
GO:0005488 IEA binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042824 Herc1-001 protein_coding Mus_musculus 0 2069
ENSMUST00000135159 Herc1-007 protein_coding Mus_musculus 0 255
ENSMUST00000135600 Herc1-005 retained_intron Mus_musculus 1.4013e-45 189
ENST00000443617 HERC1-001 protein_coding Homo_sapiens 0 1947
ENST00000558324 HERC1-012 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000561348 HERC1-011 retained_intron Homo_sapiens 0 298

Loading