C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-like, containing PHD and RING finger domains, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000126951 uhrf1-203 ENSDARG00000091448 7955 + 22:3857038-3887704 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GV CIL_0005GV_0001 CGP 22:3857038-3981093

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000790 ISS nuclear chromatin
GO:0000791 ISS euchromatin
GO:0000792 ISS heterochromatin
GO:0002088 IMP lens development in camera-type eye
GO:0003677 IEA DNA binding
GO:0004842 ISS ubiquitin-protein ligase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005657 ISS replication fork
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007049 IEA cell cycle
GO:0008270 IEA zinc ion binding
GO:0010216 ISS maintenance of DNA methylation
GO:0016568 IEA chromatin modification
GO:0016574 ISS histone ubiquitination
GO:0016874 IEA ligase activity
GO:0031100 IMP organ regeneration
GO:0035064 ISS methylated histone residue binding
GO:0042393 IEA histone binding
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0044729 ISS hemi-methylated DNA-binding
GO:0046872 IEA metal ion binding
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001258 Uhrf1-001 protein_coding Mus_musculus 0 388
ENSMUST00000113035 Uhrf1-003 protein_coding Mus_musculus 0 388
ENSMUST00000113038 Uhrf1-002 protein_coding Mus_musculus 0 388
ENSMUST00000113039 Uhrf1-004 protein_coding Mus_musculus 0 388
ENSMUST00000122244 Gm5648-001 processed_pseudogene Mus_musculus 0 353

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